Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0523 ATGAGTCGCCGAGGAATGGACGACGACGAATTCAACGAGGAGGAGGAGGAGGAGCAGGTCGCCGATTTCGACGAAGAGGAGGAGGAGGTGGAGGAGAGAGGTGGATTTGGCGGAAGGAAGAGGAGAAGATCTGGTTTCATTGACGAAGATGCGGAGGAGGATGATGAGGATGAAGAGGAAGAGGACGATGATGATGATGAGGATTTCGATGCCGGAGGTGGTGGTGGACGGAAGCGCCAGCGGAAGAAGAAGAACGCTGCTTCCTTCTTTGACGAAGAGGCTGCTGTGGATTCTGATGAGGAGGAGGAAGAGGAGGAAGGAGAGGATGATTTCATTGTTGACGGTGGAGCTGATCTTCCCGAGGAACGTGATGGCAGAAGTGTGCGTCGTGGTCGTATGATGCCACATGATGAAGAAGATCATGAAGATCTTGAAGCTGTGGCAAAAAGTATTCAAGAAAGGTACGGAAGGCGTCAGGCAGAGTATGATGAAGAAGCTACTGATGTAGAACAGCAAGCTCTGTTGCCATCTGTGAGAGATCCAAAGCTCTGGATGGTGAAATGTGCGATTGGTCGTGAGCGGGAAACTGCTGTTTGCCTTATGCAAAAGTACATAGATAAGGGGTCTGAATTGCAAATCAGGTCAGTTATTGCTCTCGATCATCTCAAAAACTACATATATGTGGAAGCAGATAAAGAGGCACATGTGAGAGAGGCTTGCAAAGGTCTACGCAACATATTTGGCCAAAAAATAACGCTTGTTCCAATCAGAGAAATGACTGATGTCCTGTCAGTTGAAAGCAAAGCTATTGACCTTGCCAGAGATACTTGGGTCAGAATGAAGATTGGGACATATAAAGGGGACCTTGCTAAAGTAGTGGATGTTGACAATGTGCGGCAGAGAGTTACAGTGAAGCTAATTCCAAGGATAGACTTACAGGCCCTTGCAAACAAATTGGAAGGTAGAGAAGTTGTGAAGAAGAAGGCATTTGTTCCTCCTCCTCGTTTTCTAAATGTTGAAGAAGCCAGGGAACTGCACATCCGTGTGGAGCATAGACGTGATGCCTATGGGGAGCGATTTGATGCAATTGGAGGCATGATGTTCAAGGATGGTTTTTTATACAAAACAGTATCAATAAAATCCATTAGTGCTCAGAACATCAAACCTACATTTGATGAGCTTGAAAAATTTCGCAAACCGGGTGAGAATGGAGATGGTGATGTAGCTAGTCTGTCAACTTTATTTGCAAACAGAAAGAAAGGGCATTTTTTGAAAGGTGATGCTGTAATTGTGATCAAGGGTGATTTAAAGAACTTGAAGGGGTGGGTGGAGAAAGTTGATGAAGATAATGTTCATATAAGGCCAGAAATTAAGGGTCTTCCAAAAACTCTTGCTGTAAATGAAAAGGAACTATGCAAATATTTTGAACCCGGAAACCATGTTAAGGTTGTTTCTGGTGCTCAAGAGGGTGCGACTGGCATGGTTGTGAAGGTGGAGCAGCATGTCCTGATCTTAATATCTGATACAACAAAGGAACATATCCGTGTGTTTGCCGATGATGTTGTGGAGAGTTCTGAAGTGACCACTGGAGTTACAAGAATTGGGGACTATGAACTTCGTGATCTTGTACTGCTCGATAATTTGAGCTTTGGTGTGATAATACGTGTAGAAAGTGAGGCATTTCAGGTTCTTAAGGGTGTTCCTGACCGAGCTGAAGTTGTGCTTGTTAAACTAAGAGAGATCAAATGTAAGTTAGATAAGAAAATCAGCGTGCAAGACAGATTCAAAAACACAGTATCAGCAAAAGATGTTGTGCGGATTATTGAGGGTCCTTGCAAAGGCAAACAAGGTCCTGTGGAGCACATATATAGAGGAATCTTGTTCATCTGTGATCGTCATCATCTTGAACATGCAGGCTTTATATGTGTTAAGGCTCAATCATGTATAGTTGTGGGAGGTTCACGCTCCAATGGGGACAGAAATGGTGATGCCTACTCGAGATTTGCTAGCCTCAGAACCCCCACTCGTATTCCACAGTCCCCGAGTAGGTTTTCTCGGGGAGGGCCTCCAAATCATTCTGGAGGAAGGGGCAGAGGTGGAAGGGGGCACGACAGTCTGACAGGTTCAACAGTTAAAGTACGCCAGGGTCCCTACAAAGGCTATCGTGGGCGCGTTATAGATGTTAAAGGCACATCAGTTCGGGTTGAATTGGAGTCCCAAATGAAGGTCGTGACTGTTGACCGCAACCATATATCTGACAACGTGGCTGTAACTCCATATCGTGAATCTCGATATGGGATGGGAAGTGAAACCCCAATGCATCCTTCTCGAACTCCCTTACATCCATATATGACTCCTATGAGAGATCCTGGAGCAACCCCTATTCACGATGGAATGAGAACACCTATGCGTGACCGAGCATGGAATCCTTATACACCAATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAGCAAGTCCACAGTACCAACCAGGAAGCCCTGCTTCACGGCCATATGATGCTCCAACTCCTGGTGCTGGTTGGGCTAGCACCCCTGGTGGCAATTATAGTGAGGCTGGGACTCCCCGGGACAGTTCTGCCTATGCCAATGCTCCAAGTCCATATTTACCATCAACACCTGGAGGGCAGCCTATGACACCAAATTCAGCGTCTTATCTTCCTGGCACCCCTGGAGGACAGCCTATGACTCCAGGAACTGGTGGTCTGGACATGATGTCCCCAGTTTTAGGTGGGGACAACGAAGGCCCCTGGTTTATGCCGGAGATATTAGTCAATGTACACAAGCCTGGAGAGGAGTCAGTTGGAGTCATACGAGAGCTTCTTTCGGATGGATCTTGCAGGGTAGCTCTGGGATCTAGCGGAGATGGTAACACAATAACAGCCCTTCCCAGTGAAATGGAAGCTGTAGTACCAAGGAAATCAGACAAAATAAAAATCATGGGTGGTGCATTGCGTGGTGCCACAGGCAAGTTGATTGGTGTTGATGGTACTGATGGTATTGTAAAAGTAGACGACACATTGGATGTGAAGATTTTAGACTTAGTTATTTTGGCAAAATTAGCTCCATCTTGA 3111 0.4613 MSRRGMDDDEFNEEEEEEQVADFDEEEEEVEERGGFGGRKRRRSGFIDEDAEEDDEDEEEEDDDDDEDFDAGGGGGRKRQRKKKNAASFFDEEAAVDSDEEEEEEEGEDDFIVDGGADLPEERDGRSVRRGRMMPHDEEDHEDLEAVAKSIQERYGRRQAEYDEEATDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSVIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFLNVEEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGENGDGDVASLSTLFANRKKGHFLKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLDNLSFGVIIRVESEAFQVLKGVPDRAEVVLVKLREIKCKLDKKISVQDRFKNTVSAKDVVRIIEGPCKGKQGPVEHIYRGILFICDRHHLEHAGFICVKAQSCIVVGGSRSNGDRNGDAYSRFASLRTPTRIPQSPSRFSRGGPPNHSGGRGRGGRGHDSLTGSTVKVRQGPYKGYRGRVIDVKGTSVRVELESQMKVVTVDRNHISDNVAVTPYRESRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPASRPYDAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVLGGDNEGPWFMPEILVNVHKPGEESVGVIRELLSDGSCRVALGSSGDGNTITALPSEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAPS 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0523 1036 CDD KOW_Spt5_1 275 312 IPR041973 -
Lal17g0523 1036 Coils Coil 13 33 - -
Lal17g0523 1036 MobiDBLite consensus disorder prediction 792 916 - -
Lal17g0523 1036 SUPERFAMILY Translation proteins SH3-like domain 415 453 IPR008991 -
Lal17g0523 1036 MobiDBLite consensus disorder prediction 860 879 - -
Lal17g0523 1036 CDD KOW_Spt5_5 703 752 IPR041978 -
Lal17g0523 1036 MobiDBLite consensus disorder prediction 9 31 - -
Lal17g0523 1036 MobiDBLite consensus disorder prediction 1 141 - -
Lal17g0523 1036 Gene3D - 477 526 IPR014722 -
Lal17g0523 1036 CDD KOW_Spt5_2 423 473 IPR041975 -
Lal17g0523 1036 MobiDBLite consensus disorder prediction 49 70 - -
Lal17g0523 1036 SMART nusgn_4 180 266 IPR006645 GO:0140673
Lal17g0523 1036 MobiDBLite consensus disorder prediction 657 714 - -
Lal17g0523 1036 MobiDBLite consensus disorder prediction 116 141 - -
Lal17g0523 1036 MobiDBLite consensus disorder prediction 672 687 - -
Lal17g0523 1036 Pfam Early transcription elongation factor of RNA pol II, NGN section 182 263 IPR005100 -
Lal17g0523 1036 Gene3D - 162 264 IPR036735 GO:0006355
Lal17g0523 1036 MobiDBLite consensus disorder prediction 32 48 - -
Lal17g0523 1036 CDD NGN_Euk 182 264 IPR039385 -
Lal17g0523 1036 CDD KOW_Spt5_4 602 644 IPR041977 -
Lal17g0523 1036 MobiDBLite consensus disorder prediction 93 115 - -
Lal17g0523 1036 MobiDBLite consensus disorder prediction 888 902 - -
Lal17g0523 1036 Gene3D - 271 313 IPR014722 -
Lal17g0523 1036 ProSitePatterns Ribosomal protein L24 signature. 426 443 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lal17g0523 1036 Gene3D - 417 474 IPR014722 -
Lal17g0523 1036 PANTHER SUPPRESSOR OF TY 5 23 1034 IPR039659 GO:0006357|GO:0032784
Lal17g0523 1036 CDD KOW_Spt5_6 977 1034 IPR041980 -
Lal17g0523 1036 Gene3D - 687 754 IPR014722 -
Lal17g0523 1036 CDD KOW_Spt5_3 474 524 IPR041976 -
Lal17g0523 1036 SMART kow_9 474 501 IPR005824 -
Lal17g0523 1036 SMART kow_9 598 625 IPR005824 -
Lal17g0523 1036 SMART kow_9 704 731 IPR005824 -
Lal17g0523 1036 SMART kow_9 271 298 IPR005824 -
Lal17g0523 1036 SMART kow_9 422 449 IPR005824 -
Lal17g0523 1036 SMART kow_9 983 1010 IPR005824 -
Lal17g0523 1036 PIRSF Spt5 2 1036 IPR017071 GO:0006357|GO:0032784
Lal17g0523 1036 Pfam KOW motif 708 737 IPR005824 -
Lal17g0523 1036 Pfam KOW motif 477 502 IPR005824 -
Lal17g0523 1036 Pfam Spt5 transcription elongation factor, acidic N-terminal 89 176 IPR022581 -
Lal17g0523 1036 SUPERFAMILY Translation proteins SH3-like domain 466 525 IPR008991 -
Lal17g0523 1036 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 23 1034 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0523 Lal-Chr17 3636675 3643800 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0523 K15172 - gmx:100801380 1736.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0523 17 3636675 3643800 Lal17g0523 17 3636675 3643800 ECH
Lal17g0523 17 3636675 3643800 Lal21g0542 21 3952012 3961790 LSH
Lal17g0523 17 3636675 3643800 Lal4g0453 4 3179499 3187112 LSH