Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0212 ATGAAGCACACTTCCTCTGATGCAGTTTCATCTCTTTCTTCTGCACCCGACCAATCACACGCTGCCACATCAGACAACAAGTCTCTCACAGTTACCTCTTCTTCCTCCTCCGCCGCCGCGCCTGACGACCTCACCATAGCCTCAAGAGACGGTGGAGGCGCCGCCGCGCAGGAAACCGTAGTCATTGATCGTCGCGGCGAGTACTCCACCGTGTGCCGATGGACAGTGCAGAATTTTCCGAGGATGAAAGCTAGGGCACTGTGGAGCAAGTATTTTGAGGTTGGAGGTTACGATTGTCGTCTCCTTATATACCCTAAGGGTGATTCACAAGCTCTTCCTGGTTACATCTCCATCTATCTTCAAATCATGGACCCTCGCGGAACCTCTTCAGCGAAATGGGACTGTTTCGCCAGCTACCGACTCGCAATCGTTAACGTCGCCGATGATTCAAAAACGATTCACCGCGATTCCTGGCATCGTTTCTCCAGTAAGAAGAAATCCCACGGTTGGTGCGACTTTACACCGTCCTCTACCGTTTTTGATCCAAAATTAGGTTATGTGTTTAACAATGATTCGGTTTTGATAACTGCTGATATTATCATTCTCAATGAGTCTGTTAATTTCACTCGTGATAACAATGAGTTGCAATCATCTTCTCTATCGTCGTCCTTATCGACTTCCTCTGTGGTTGCGAGTCCTGTGTCTGATGTTTTGAGTGGGAAATTTACTTGGAAAGTGCATAATTTCAGTTTATTTAGGGAAATGATCAAAACACAGAAGATAATGAGTCCGGTATTTTCAGCGGGGGAGTGTAATTTGAGGATCAGTGTGTACCAGAGCTCGGTGAACGGGATTGAGTATCTTTCAATGTGTTTGGAAAGTAAGGATACTGATAAGGCCGTGATGTTGTCTGATAGGAGTTGTTGGTGTTTGTTTAGAATGTCTGTGTTGAATCAGAAGCCGGGTTCGAACCACACGCATAGGGATTCCTATGGGCGGTTCGCAGCTGATAATAAGAGCGGTGACAATACCAGCTTGGGATGGAATGATTATATGAAGATGTCAGATTTTATTGGGGCTGATTCAGGGTTTATAGTGGACGATACTGCAGTTTTTAGCACGTCGTTTCATGTCATCAGGGAGTTCAGTAGCTTCTCAAAAAATGGGGCTATAATTGCAGGGAGAAGTGGGGGTGGGGCAAGGAAGTCAGATGGCCATATCGGAAAGTTCACTTGGAGGATTGAGAATTTTACAAGGTTGAAAGATTTACTGAAGAAGAGGAAGATTACTGGTCTTTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATCGGGATTGTCGCCTTATTGTTTATCCACGAGTTATATATCTACTGTTATCTAGTTGCAAGATCAAGTGGGTGAATCTCGGCGCAACGGTGGCCATGAAAAAGTTGTCTGGGCAGTCCCAGCCACCATGCCACCTTTCTGTGTTTCTTGAAGTTACGGATTCAAGAAACACTTCCAGTGATTGGAGTTGTTTTGTTAGTCATCGTTTATCAGTTGTGAACCAGAGGGTGGAGGATAAGTCTGTCACCAAGGAATCTCAGAACCGCTACTCCAAAGCTGCAAAAGATTGGGGCTGGCGTGAATTCGTGACACTTACAAGTCTCTTTGATCAAGACTCAGGTTTTCTTGTTCAGGATACTGTCATATTCTCAGCTGAAGTTCTTATATTGAAAGAAACATCAATAATGCAGGATTTTACTGGTCATGATTCTGAGTTAAGTAGCAATGGTTCCCTTGATAATTCTGAGAAAAGAAGTTCTTTTACATGGAAGGTGGAGAATTTCCTGTCTTTTAAGGAAATAATGGAGAGTCGAAAAATCTTCAGTAAATTCTTTCAGGCTGGTGGATGTGAACTTCGGATTGGTGTGTACGAGTCATTTGACACCATATGCATTTATTTGGAGAGTGACCAGGCTGGTGGTAGTGATCCTGATAAAAACTTCTGGGTCAAATATAGGATGGCTATTGTGTCTGATATGTTAGAAGCAGATGCTGGGTTTTTGGTCCGTGACACTGTTGTTTTTGTATGTGAAATATTGGATTGCTGCCCATGGTTTGAGTTTTCAGACTTGGAGGTTTTAGCTTCAGAGGATGATCAGGATGCTTTGACCACTGATCCTGATGAGCTGATCGACTCTGAAGAAAGTGAAGGAATAAGTGGAGACGAGGAGGATATGTTCAGAAATCTTCTTTCCAGAGCTGGATTTCATCTAACTTATGGAGATGATCCTTCACAACCACAGGTTACGTTGAGAGAGAAACTTTTGATGGATGCTGGTGCAATTGCTGGGTTTCTAACTGGACTTCGGGTTTATCTTGATGATCCTGCCAAAGTAAAGCGTTTGCTTCTTCCGGCGAAGCTCTCTGGTAGTTGTGACGGAAAGAAGGTCACCAAGACTGATGAGTCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTGCAGCAAGCAATCATTGATTTACTCTTGGACATAATGGTTGAGTGCTGCCAACCTTCTGAAGGAGGTCCTGTTGCTGATTCTGTTGATGCATGCTCAAAACCTTCTCCAGACAGCATTGGAGCTGCTAGTCCACTCAAATGTAATAGAGAAAATGGATCAACAGTGTCTGCACAATATCCTGTTAATGAGAGATTGGAGTCTGTTGTTGAAGATAGCAGTACTACATCTGCGGTACAGAGCTCTGATTTAAATGCTAATGGTATTCAGGAAAAAGCTCTTCCTGGACAGCCTATTTGTCCCCCAGAAACATCTGCCACTGGTTCAGAAAATATGCCCGTTTGGTCAAAGACCAAGTGGCCAGAACAGTCTGAGGAGCTCTTAGGTTTGATTGTAAACTCGCTAAGAGCTTTGGATGGGGTTGTTTCGCAAGGCTGTCCAGAGCCAAGACGGCGATCTCAGTCTGCACAGAAAATTGCTCTTGTATTGGACAAGGCTCCTAAGCATTTGCAAGCAGACCTCGTTGCTCTAGTACCCAAATTGGTTGAGCATTCCGAACACCCACTGGCTGCATGCACACTTCTTGAGCGACTTCAAAAGTCTGATGCAGAGCCTTCTCTACGAATACCTGCTTTTAGGGCTCTTAGTCAACTAGATTGTGGCAGTGAAGTGTGGGAGCGCATTCTGTTTCAGTCGTTTGAGCTTTTGACAGACTCAAATGATGAACCCCTTGCTGCAACAATTGATTTTATATTCAAAGCGGCATCTCAATGTCAACACCTACCTGAAGCAGTTAGGTCTGTTCGTGTCAGGCTGAAGAATCTAGGACTTGAGGTGTCACCTTGTGTCCTTGACTTTTTGAGTAAGACTATAAACAGTTGGGGCGATGTTGCTGAAACAATACTTAGGGACATTGACTGTGACAATGATTATGGTGACAGTTGCTCAGCTCTGCCATGTGGAGTTTTCTTATTTGGTGAACATGACATTTCTCCTCCTGGGCTGCATGTGATTGATGAGAAGGCTTTCCGTGCTTGTCGTCCTTTTTTTGATATTTATATATTATTTGAGATGTTATCTATTCCTTGTCTTGCCATTGAAGCATCTCAAACATTTGAGAGAGCTGTAACTCGAGGTGTAATAGATGTTCAGTCTGTAGCGCTAGTATTGGAAAGTCGCCTTTCCCAAAGATTCAATAATAGTGCCAGATATGTTTCTGAAAATTTTCAACATTCAGATGGTGTAGCGGAGGGAAATGCTGTTGAGCAATTGGGAGTTCAAAGGGATGATTTTAGTTCAGTTCTTGGACTCGCTGAAACTTTGGCCCTCTCCAGAGATCCATGTGTGAAAGAATTTGTGAAGTTGCTCTACACAATATTGTTTAGGTGGTATGCCAATGAATCTTATCGAGGGAAGATGCTGAAGAGGCTTGTTGACCGTGCTACCAGCACTACAGATAATGGCCGTGAAGTAGATTTTGATTTGGATATCTTGGTTAATTTGGTCTGTGAGGAGCAGGAGGTTATTAGGCCTGTTTTGAGCATGATGCGCGAAGTTGCTGAACTTGCAAATGTTGATCGGGCTGCTCTATGGAACCAATTATGTGCTAGTGAAGATGAAATTGTTCACATTCGTGAAGAAAGCAAAACTGAGATTTCCAATATGGCTAGGGAAAAGGCTACTATATTGCAGAAGCTAAGTGAATCTGAGGCCACAAACATTCGTCTCAAGAATTTATGTCTGATGTACTTCATGATTGGACAGTCTGAAATGAAGGCTGAAATGGACCGGTTTACGCGGGAAAAGAAGGAACTATCAGAACAAGTTCAAGAAGTTGAGAGTCAGCTTGAGTGGCTTCGCTCAGAGCGGGATGATGAAATGGCAAAGTTGTCGACAGACAAGAAAGTTCTTCAGGATCGCTTACATGATGCTGAGTCACAACTTTCTCAATTGAAGTCTCGGAAACGTGATGAATTGAAGAAAGTAGTGAAGGAGAAAAATGCACTTGCTGAAAGATTGAAGAACGCTGAAGGTGCACGTAAGAGATTTGACGAAGAGTTGAAAAGATTTGCAACAGAGAATGTAACTAGGGAAGAAATACGAAAATCACTTGAGGATGAAGTTCGTAGATTGACTCAAACAGTTGGGCAAACTGAGGGAGAAAAGCGGGAAAAGGAGGAGCAAGTTGCTAGGTGTGAAGCATATATTGATGGCATGGAATCAAAGTTACAGACCTGCCAGCAATATATTCACACACTGGAGACCTCGCTCCAGGAGGAAATGTCACGACATGCCCCTCTATATGGTGCTGGTCTGGAAGCTCTATCAATGAAAGAATTGGAAACTCTATCTCGTATTCATGCAGAAGGGCTGAGGCAAATACATACCCTTCAACAGCATAAAGGGAATCCTGTTGGGAATCCAATTGTGAGTCCCCATACTCTCCAGCACAACCATGGATTATATCCTCCTCCCTCAATCATCCCAAATGGGGTTGGGATCCATAGCAACGGCCACATGAATAGTGCAGTTGGACCCTGGTATAACCACTCTTAA 5049 0.4363 MKHTSSDAVSSLSSAPDQSHAATSDNKSLTVTSSSSSAAAPDDLTIASRDGGGAAAQETVVIDRRGEYSTVCRWTVQNFPRMKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSAKWDCFASYRLAIVNVADDSKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDPKLGYVFNNDSVLITADIIILNESVNFTRDNNELQSSSLSSSLSTSSVVASPVSDVLSGKFTWKVHNFSLFREMIKTQKIMSPVFSAGECNLRISVYQSSVNGIEYLSMCLESKDTDKAVMLSDRSCWCLFRMSVLNQKPGSNHTHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGADSGFIVDDTAVFSTSFHVIREFSSFSKNGAIIAGRSGGGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRVIYLLLSSCKIKWVNLGATVAMKKLSGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRVEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFTGHDSELSSNGSLDNSEKRSSFTWKVENFLSFKEIMESRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAGGSDPDKNFWVKYRMAIVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEESEGISGDEEDMFRNLLSRAGFHLTYGDDPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPAKLSGSCDGKKVTKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGGPVADSVDACSKPSPDSIGAASPLKCNRENGSTVSAQYPVNERLESVVEDSSTTSAVQSSDLNANGIQEKALPGQPICPPETSATGSENMPVWSKTKWPEQSEELLGLIVNSLRALDGVVSQGCPEPRRRSQSAQKIALVLDKAPKHLQADLVALVPKLVEHSEHPLAACTLLERLQKSDAEPSLRIPAFRALSQLDCGSEVWERILFQSFELLTDSNDEPLAATIDFIFKAASQCQHLPEAVRSVRVRLKNLGLEVSPCVLDFLSKTINSWGDVAETILRDIDCDNDYGDSCSALPCGVFLFGEHDISPPGLHVIDEKAFRACRPFFDIYILFEMLSIPCLAIEASQTFERAVTRGVIDVQSVALVLESRLSQRFNNSARYVSENFQHSDGVAEGNAVEQLGVQRDDFSSVLGLAETLALSRDPCVKEFVKLLYTILFRWYANESYRGKMLKRLVDRATSTTDNGREVDFDLDILVNLVCEEQEVIRPVLSMMREVAELANVDRAALWNQLCASEDEIVHIREESKTEISNMAREKATILQKLSESEATNIRLKNLCLMYFMIGQSEMKAEMDRFTREKKELSEQVQEVESQLEWLRSERDDEMAKLSTDKKVLQDRLHDAESQLSQLKSRKRDELKKVVKEKNALAERLKNAEGARKRFDEELKRFATENVTREEIRKSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQTCQQYIHTLETSLQEEMSRHAPLYGAGLEALSMKELETLSRIHAEGLRQIHTLQQHKGNPVGNPIVSPHTLQHNHGLYPPPSIIPNGVGIHSNGHMNSAVGPWYNHS 1682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0212 1682 PANTHER TRAF-LIKE FAMILY PROTEIN 672 1682 - -
Lal4g0212 1682 PANTHER TRAF-LIKE FAMILY PROTEIN 37 672 - -
Lal4g0212 1682 CDD MATH 408 569 IPR002083 GO:0005515
Lal4g0212 1682 CDD MATH 73 199 IPR002083 GO:0005515
Lal4g0212 1682 Coils Coil 1419 1524 - -
Lal4g0212 1682 Coils Coil 1532 1559 - -
Lal4g0212 1682 CDD MATH 240 372 IPR002083 GO:0005515
Lal4g0212 1682 Pfam MATH domain 77 200 IPR002083 GO:0005515
Lal4g0212 1682 Pfam MATH domain 486 571 IPR002083 GO:0005515
Lal4g0212 1682 MobiDBLite consensus disorder prediction 1 42 - -
Lal4g0212 1682 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 588 676 IPR008974 GO:0005515
Lal4g0212 1682 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 234 381 IPR008974 GO:0005515
Lal4g0212 1682 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 400 578 IPR008974 GO:0005515
Lal4g0212 1682 SUPERFAMILY TRAF domain-like 68 207 - -
Lal4g0212 1682 MobiDBLite consensus disorder prediction 1 51 - -
Lal4g0212 1682 ProSiteProfiles MATH/TRAF domain profile. 239 376 IPR002083 GO:0005515
Lal4g0212 1682 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 67 215 IPR008974 GO:0005515
Lal4g0212 1682 ProSiteProfiles MATH/TRAF domain profile. 69 199 IPR002083 GO:0005515
Lal4g0212 1682 SUPERFAMILY TRAF domain-like 601 695 - -
Lal4g0212 1682 SUPERFAMILY TRAF domain-like 237 382 - -
Lal4g0212 1682 ProSiteProfiles MATH/TRAF domain profile. 407 569 IPR002083 GO:0005515
Lal4g0212 1682 PANTHER TRAF-LIKE FAMILY PROTEIN 672 1682 - -
Lal4g0212 1682 PANTHER TRAF-LIKE FAMILY PROTEIN 37 672 - -
Lal4g0212 1682 MobiDBLite consensus disorder prediction 921 945 - -
Lal4g0212 1682 CDD MATH 602 694 IPR002083 GO:0005515
Lal4g0212 1682 SUPERFAMILY TRAF domain-like 486 575 - -
Lal4g0212 1682 SUPERFAMILY ARM repeat 976 1133 IPR016024 -
Lal4g0212 1682 SMART math_3 71 179 IPR002083 GO:0005515
Lal4g0212 1682 SMART math_3 244 357 IPR002083 GO:0005515
Lal4g0212 1682 SMART math_3 605 709 IPR002083 GO:0005515
Lal4g0212 1682 SUPERFAMILY TRAF domain-like 408 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0212 Lal-Chr4 1316370 1327052 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0212 - - ccaj:109798115 2778.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0212 4 1316370 1327052 Lal4g0212 4 1316370 1327052 ECH
Lal17g0223 17 1387312 1396757 Lal4g0212 4 1316370 1327052 LSH
Lal21g0328 21 2181912 2190284 Lal4g0212 4 1316370 1327052 LSH