Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0328 ATGAAGCACACTTCCTCTGAGGCAGTTTCATCTATTTCTTCTGCACCCGACCAATCGCACGCTTCCACATCATCATCGTCATCGTCGTCGCTCTCATCGGACCACAAGACCGCCCTAGTTGTATCGACATCGAACTCCTCCTCCTCCTCCGCCGTCGCGGCAGAGGACCTGACTATATCGTCGAGAGATGGAGGAGGAGGCGCCGCCGCGCTGGAAACCGTTGCTGTCGATCGTCGCGGCGAGTACTCTGCCGTGTGTAGATGGACGGTGCAGAATTTCCCGAGGATAAAAGCTAGGGCACTGTGGAGCAAATACTTTGAGGTTGGCGGTTATGATTGTCGGCTCCTTATATACCCTAAGGGTGATTCGCAAGCTCTTCCTGGTTATATCTCAATCTATCTTCAAATCATGGACCCTCGCGGAACCTCGTCCTTGAAATGGGACTGTTTCGCGAGCTACCGTCTCGCAATCGTTAACGTTGCCGACGATTCCAAAACGATTCACCGTGATTCCTGGCATCGGTTCTCCAGTAAGAAGAAATCGCACGGTTGGTGCGATTTCACACCGTCTTCTACTGTTTTTGATCCGAGATTAGGTTATATGTTTAGCAACGATTCGGTTTTGATAACTGCTGATATTCTTATTCTCAACGAGTCTGTTAATTTCACTCGTGATAACTATGAGTTGCAGTCGTCATCGTCGTCATCCACTTTCTCGGTGGTTGCAAATCCTGTGTCTGATGTTTTGAGTGGGAAGTTTACTTGGAAAGTGCATAATTTCAGTTTATTTAAGGATATGATCAAATCACAGAAGATAATGAGTCCGGTTTTTCCTGCTGGAGAGTGTAATTTGAGGATTAGTGTGTACCAAAGTTCAGTGAATGGGATTGAGTATCTTTCAATGTGTTTGGAAAGTAAGGATACTGATAAGACTGTGATGTTGTCAGATAGGAGTTGTTGGTGTTTGTTTAGAATGTCTGTGTTGAACCAGAAGCCCGGTTCAAATCATATGCACAGGGATTCCTATGGGCGGTTCGCTGCTGATAACAAGAGTGGTGACAATACCAGCTTGGGCTGGAATGATTATATGAAGATGTCAGATTTTATTGGGACTGATTCGGGGTTTATAGTGGATGATACTGCAATTTTTAGCACGTCGTTTCATGTGATCAAGGAGTTTTGTAACTTCTCTAAGAATGGGACTGTAATTGCTGGGAGAAGTGGGGGTGGAGCAAGGAAGTCAGATGGCCACATCGGAAAGTTCACTTGGAGAATTGAAAATTTTACAAGGTTGAAGGATTTACTGAAGAAGAGGAAGATTACAGGTCTTTGCATCAAGAGCAGGAGGTTTCAGATTGGTAACCGGGATTGTCGGCTTATTGTTTATCCCAGAGGGCAGTCTCAGCCACCATGCCACCTTTCAGTTTTTCTTGAAGTTACGGATTCAAGAAATACTACCAGTGATTGGAGTTGTTTTGTTAGTCATCGTTTATCAGTTGTGAACCAGAGGGTGGAGGATAAGTCTGTCACCAAGGAATCTCAGAACCGCTACTCCAAAGCTGCAAAAGATTGGGGCTGGCGTGAATTCGTGACACTTACAAGTCTCTTTGATCAAGACTCAGGTTTTCTTGTCCAGGATACTGTCATATTCTCAGCCGAAGTTCTTATATTGAAAGAGACATCAACAATGCAGGATTTTACTGGTCATGATTCTGAGTTAAGCAGCAATGGTTCCCTTGATAGTGGTGAGAAAAGAAGTTCCTTTACATGGAAAGTGGAAAATTTCCTGTCGTTTAAGGAAATAATGGAGACTCGAAAAATCTTCAGCAAATTCTTTCAGGCTGGTGGATGTGAACTTCGGATTGGTGTGTACGAGTCATTTGACACCATATGTATTTATTTGGAGAGTGACCAGGCTGTTGGTAGTGATCCTGATAAAAACTTCTGGGTCAAATATAGGATGGCTATTGTGAATCAGAAAAACCCGGCCAAGACAGTATGGAAAGAATCTTCTATCTGTACGAAGACGTGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATGTTAGAAGCAGATGCCGGGTTTCTGGTCCGTGACACTGTTGTTTTTGTATGTGAAATATTGGACTGCTGCCCTTGGTTTGAGTTTTCAGACTTAGAGGTTTTAGCTTCAGAGGATGATCAGGATGCATTGACCACTGATCCTGATGAGCTCGTCGACTCTGAAGAAAGTGAAGGAATAAGTGGAGATGAGGAAGATATTTTCAGAAATCTTCTTTCCAGAGCTGGATTTCATCTAACTTATGGAGATAATCCTTCACAGCCACAGGTTACTCTGAGAGAGAAACTTTTGATGGACACTGGTGCAATTGCTGGGTTTCTGACTGGACTTCGGGTTTATCTTGATGATCCTGCCAAAGTAAAGCGTTTGCTTCTTCCTACAAAGCTCTCTGGCACTTGTGATGGAAAGAAGGCCACCAAGATTGATGAGTCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTAAAAGTCTTGCAGCAAGCAATTATTGATTTACTCTTGGATATAATGGTTGAGTGCTGCCAAACTTCCGAAGGGGGTCCTGCTGCTGATTCTGTTGATGCATGCTCCAAACCTTCTCCAGACAGCAGTGGAGCTGCTAGTCCACTCAAATGTGATAGAGAAAATGGAGCAACAGTGTCTGCTCAATTTCCCATTAAGGAGAGATTGGATAATGTTGTTGAAGATATCAGTAGTACATCTGCGGTACAGAGCTCTGATTTAAATGCTAATGGTATTCAGGAAAAAGCTCCTCCTGGACAGACTATTTTTCCACCAGAAACATCTGCCACTGGTTGGGAAAATATGCCTTTTAGGTCAAAGACAAAGTGGCCAGAGCAGTCTGAGGAGCTCTTAGGTTTGATTGTGAACTCGCTAAGAGCTTTGGATGGGTCTGTTCCACAAGGCTGTCCAGAGCCAAGACGTCGACCTCAGTCTGCACAGAAAATTTGTCTTGTATTGGACAAGGCTCCTAAGCATTTGCAAGCAGACCTTGTTGCTCTGGTACCCAAATTGGTTGAGCATTCCGAGCACCCACTGGCGGCATGTGCACTTCTTGAGCGACTTCAAAAGTCTGATGCAGAACCTGCTCTACGAATACCTGTTTTCGGGGCTCTTAGTCAACTGGAGTGTGGCAGTGAAGTGTGGGAGCGCATTCTGTTTCAGTCATCTGAGCTTTTGGAAGACTCAAATGATGAACCCCTTGCTGCAACAATAGATTTTATATTCAAAGCGGCATCTCAATGTCAACACCTACCTGAAGCAGTTAGGTCTGTTCGTTCCAGGCTGAAGAATCTAGGTCTTGAGGTGTCACCTAGTGTCCTTGAGTTTTTGAGTAAGACTATAAATAGTTGGGGTGATGCTGCTGAAACCATACTTAGGGACATTGATTGTGACAATGATTATGGTGACAGTTGCTCAGCTGTGCCATGTCGAGTTTTCTTATGTGGCGAACATATCATTGCTCCTCCTGGGCTGCATGTGGTTGATGAGCAGACATTCCGTGCCTGTCGTCATTTTTCTGATATTTATATAATGTTGGAGATGTTATCTATTCCTTGTCTTGCAATTGAAGCATCTCAAACATTTGAGAGAGCTGTAGCTCGGGGTGCAATACATGCTCAGTCTGTAGCGCTAGTATTGGAAAGTCGCCTTTCCCAAAGTTTCAATGGTAATGCTAGATATGTTTCTGAAAATTTTGAACAACATTCAGATGGAATAGTGGAGGGAGATGCTGGTGAGCAAATGGGAGTTCAAAGGGATGATTTTACTTTAGTTCTTGGACTTGCTGAAACTTTGGCCCTCTCCAGAGACCGATGTGTGAAAGAATTTGTGAAGTTGCTCTACACGATATTGTTTAGGTGGTATGCCGATGAATCTTATCGAGGTAAGATGCTGAAGAGGCTTGTTGACCGCGCCACCAGCCCTACAGATAATGATCGTGAAGTAGATTTTGATTTGGATATCTTGGTCAATTTGGTCTGTGAGGAACACGAGATTATTAGGCCTGTTTTGAGCATGATGCGTGAAGTTGCTGAACTTGCAAATGTCGACCGGGCTGCTCTATGGCACCAGCTATGTGCTAGTGAAGATGAAATTATTCGCATTCGTGAAGAAAGCAAAACAGAGATTTCCAATATGGCTAGGGAAAACATTACTATATCACAGAAGCTAAGTGAATCTGAGGCCACAAACATTCGTCTCAAGGCTGAAATGAAGGCCGAGATGGATCGTTTTACTCGGGAAAAGAAGGAGCTATCAGAACATGTTCATGAAGTTGAGAGTCAGATTGAGTGGCTTCGCTCAGAGCGAGATGATGAAATAAAAAAACTGTATGCAGACAAGAAAGTTCTTCAGGACCGTTTACATGATGCTGACGCACAACTTTCTCAATTGAAATCTCGGAAACGTGACGAATTAAAGAAAGTAGTAAAGGAGAAAAATGCACTTGCTGAAAGACTGAAGAATGCCGAAGCCGCACGTAAGAGATTTGATGAAGAGTTGAAAAGATTTGCAACAGAGAATGTCACTCGGGAAGAAATCCGACAATCACTTGAGGATGAAGTTCGCAGATTGACTCAAACAGTTGGGCAAACTGAGGGAGAAAAGCGGGAGAAGGAAGAGCAGGTTGCTAGGTGCGAAGCATATATTGATGGCATGGAATCAAAGTTGCAGGCCTGCCAGCAATATATTCACACGCTCGAGGCCTCACTCCAGGAGGAAATGTCACGACATGCCCCTCTATATGGTGCTGGTCTGGAAGCTCTATCAATGAAAGAATTGGAAACTCTATCACGTATTCACGAAGAAGGGCTGAGGCAGATCCATGCCCTTCAACACCGTAAAGGTAATCCTGCTGGGAGTCCTCTTGTGAGTCCTCATACTCTCTCACACAACCATGGATTATATCCTCCTCCATCGCCCGCAATGGCTGTGGGACTGCCTCCCTCAATCATCCCAAATGGGGTAGGGATCCATAGCAACGGGCACGTGAATGGTGCAGTTGGACCCTGGTTTAACCACTCTTAA 5094 0.4423 MKHTSSEAVSSISSAPDQSHASTSSSSSSSLSSDHKTALVVSTSNSSSSSAVAAEDLTISSRDGGGGAAALETVAVDRRGEYSAVCRWTVQNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSLKWDCFASYRLAIVNVADDSKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDPRLGYMFSNDSVLITADILILNESVNFTRDNYELQSSSSSSTFSVVANPVSDVLSGKFTWKVHNFSLFKDMIKSQKIMSPVFPAGECNLRISVYQSSVNGIEYLSMCLESKDTDKTVMLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGTDSGFIVDDTAIFSTSFHVIKEFCNFSKNGTVIAGRSGGGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTTSDWSCFVSHRLSVVNQRVEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSTMQDFTGHDSELSSNGSLDSGEKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVKYRMAIVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELVDSEESEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDTGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGTCDGKKATKIDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQTSEGGPAADSVDACSKPSPDSSGAASPLKCDRENGATVSAQFPIKERLDNVVEDISSTSAVQSSDLNANGIQEKAPPGQTIFPPETSATGWENMPFRSKTKWPEQSEELLGLIVNSLRALDGSVPQGCPEPRRRPQSAQKICLVLDKAPKHLQADLVALVPKLVEHSEHPLAACALLERLQKSDAEPALRIPVFGALSQLECGSEVWERILFQSSELLEDSNDEPLAATIDFIFKAASQCQHLPEAVRSVRSRLKNLGLEVSPSVLEFLSKTINSWGDAAETILRDIDCDNDYGDSCSAVPCRVFLCGEHIIAPPGLHVVDEQTFRACRHFSDIYIMLEMLSIPCLAIEASQTFERAVARGAIHAQSVALVLESRLSQSFNGNARYVSENFEQHSDGIVEGDAGEQMGVQRDDFTLVLGLAETLALSRDRCVKEFVKLLYTILFRWYADESYRGKMLKRLVDRATSPTDNDREVDFDLDILVNLVCEEHEIIRPVLSMMREVAELANVDRAALWHQLCASEDEIIRIREESKTEISNMARENITISQKLSESEATNIRLKAEMKAEMDRFTREKKELSEHVHEVESQIEWLRSERDDEIKKLYADKKVLQDRLHDADAQLSQLKSRKRDELKKVVKEKNALAERLKNAEAARKRFDEELKRFATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHALQHRKGNPAGSPLVSPHTLSHNHGLYPPPSPAMAVGLPPSIIPNGVGIHSNGHVNGAVGPWFNHS 1697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0328 1697 Coils Coil 1463 1529 - -
Lal21g0328 1697 ProSiteProfiles MATH/TRAF domain profile. 585 709 IPR002083 GO:0005515
Lal21g0328 1697 PANTHER TRAF-LIKE FAMILY PROTEIN 45 1697 - -
Lal21g0328 1697 CDD MATH 87 213 IPR002083 GO:0005515
Lal21g0328 1697 SUPERFAMILY TRAF domain-like 82 221 - -
Lal21g0328 1697 SUPERFAMILY TRAF domain-like 248 394 - -
Lal21g0328 1697 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 411 563 IPR008974 GO:0005515
Lal21g0328 1697 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 574 711 IPR008974 GO:0005515
Lal21g0328 1697 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 70 220 IPR008974 GO:0005515
Lal21g0328 1697 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 245 393 IPR008974 GO:0005515
Lal21g0328 1697 SMART math_3 85 193 IPR002083 GO:0005515
Lal21g0328 1697 SMART math_3 423 535 IPR002083 GO:0005515
Lal21g0328 1697 SMART math_3 255 368 IPR002083 GO:0005515
Lal21g0328 1697 SMART math_3 590 690 IPR002083 GO:0005515
Lal21g0328 1697 Pfam MATH domain 91 215 IPR002083 GO:0005515
Lal21g0328 1697 Pfam MATH domain 598 705 IPR002083 GO:0005515
Lal21g0328 1697 Pfam MATH domain 450 556 IPR002083 GO:0005515
Lal21g0328 1697 MobiDBLite consensus disorder prediction 868 894 - -
Lal21g0328 1697 MobiDBLite consensus disorder prediction 933 956 - -
Lal21g0328 1697 Gene3D - 1456 1648 - -
Lal21g0328 1697 MobiDBLite consensus disorder prediction 1637 1659 - -
Lal21g0328 1697 CDD MATH 251 383 IPR002083 GO:0005515
Lal21g0328 1697 CDD MATH 419 554 IPR002083 GO:0005515
Lal21g0328 1697 SUPERFAMILY TRAF domain-like 419 562 - -
Lal21g0328 1697 PANTHER TRAF-LIKE FAMILY PROTEIN 45 1697 - -
Lal21g0328 1697 SUPERFAMILY TRAF domain-like 586 710 - -
Lal21g0328 1697 ProSiteProfiles MATH/TRAF domain profile. 418 554 IPR002083 GO:0005515
Lal21g0328 1697 ProSiteProfiles MATH/TRAF domain profile. 83 213 IPR002083 GO:0005515
Lal21g0328 1697 Coils Coil 1424 1458 - -
Lal21g0328 1697 Coils Coil 1537 1564 - -
Lal21g0328 1697 MobiDBLite consensus disorder prediction 1 34 - -
Lal21g0328 1697 CDD MATH 587 709 IPR002083 GO:0005515
Lal21g0328 1697 ProSiteProfiles MATH/TRAF domain profile. 250 387 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0328 Lal-Chr21 2181912 2190284 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0328 - - ccaj:109798115 2920.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0328 21 2181912 2190284 Lal21g0328 21 2181912 2190284 ECH
Lal17g0223 17 1387312 1396757 Lal21g0328 21 2181912 2190284 LSH
Lal21g0328 21 2181912 2190284 Lal4g0212 4 1316370 1327052 LSH