Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0223 ATGAAGAATATCACAAACTCCGATAAGATAAAAATGAAGCACACTTCCTCTGTGGCAGTTTCGTCTCTATCTTCTGCACCCGACCAATCACAACCTTCCACGTCATCGTCAGCCTCATCGGAACACAAGTCCGCCTTAGTTACCTCCACCTCCACTTCCGCCGCCGCGACCGAGGACCTGACAATATCGTCACGAGACGGTGGAGGTGGCGCCGCTGCGCAGGAAACCGTTGCCGTTGAACGTCGCGACGAGTACTCCGTCGTGTGTCGATGGACGGTGCAGAATTTCCCGAGGATAAAAGCTAGGGCACTGTGGAGCAAGTATTTTGAGGTTGGCGGTTACGATTGTCGACTTCTTATATATCCTAAGGGTGATTCACAAGCTCTTCCTGGTTACATCTCTATCTATCTTCAAATTATGGACCCTCGCGGAACCTCGTCGTCGAAATGGGACTGTTTCACGAGCTACCGTCTCGCAATCGTTAACGTTGCCGACGATTCCAAAACAATTCACCGTGATTCCTGGCACCGATTCTCCGGTAAGAAGAAATCGCACGGTTGGTGCGATTTCACACCATCTTCTACTGTTTTTGATCCGAAATTAGGTTTTATGTTTAATAATGATTCCGTTTTGATAACTGCTGATATTCTTATTATCAACGAGTCTGTTAATTTCACTCGTGATAACAATGAGTTGCAATCGTCGTTGTCATTGTCGTCGTCATCGACCTCATCTGTGGTTGCGAGTCCTGTGTCTGATGTTTTGAGTGGGAAATTTACTTGGAAAGTGCATAATTTTACTTTATTTAAGGATATGATCAAAACACAGAAGATAATGAGTCCGGTTTTTCCAGCTGGGGAGTGTAATTTAAGGATCAGTGTGTACCAGAGCTCGGTGAATGGGGTTGATTATCTTTCAATGTGTTTGGAAAGTAAGGATACTGATAAGACAGTGTTGTTGTCTGATAGGAGTTGCTGGTGTTTGTTTAGAATGTCTGTGTTGAAACAGAAGCCAGGTTCGAATCACATGCATAGGGATTCGTATGGGCGGTTTGCAGCTGATAATAAGAGTGGTGACAATACCAGCTTGGGGTGGAATGATTATATGAAGATGTCAGATTTTATTGGGACGGATTCAGGGTTTATAGTGGATGATAATGTGGTTTTTAGTACTTCATTTCACGTGATCAAGGAGCTTAGTAGCTTCTCTAAGAATGGGGCTGTAATTGGAGGGAGAAATGTGGGTGGGACGAGGAAGTCAGATGGCCATATCGGAAAGTTCATTTGGAAGATTGAGAATTTTACAAGATTGAAGGATTTACTGAAGAAGAGGAAGATTACAGGTCTTTGCATTAAGAGCAGGAGGTTTCAGATCGGTAATCGGGATTGTCGTCTTATTGTTTATCCCAGAGGGCAGTCTCAGCCACCATGCCACCTTTCGGTGTTTCTTGAAGTTACGGATTCAAGAAATACTTCTGGTGACTGGAGTTGTTTTGTTAGTCATCGTTTATCAGTTGTGAACCAGAAGGTGGAGGATAAGTCTGTGACCAAGGAATCTCAGAACCGCTACTCCAAATCTGCAAAAGATTGGGGCTGGCGTGAATTCGTGACACTCACAAGTCTCTTTGATCAAGACTCAGGTTTTCTTGTCCAGGATACTGTCATATTCTCAGCTGAAGTTCTTATATTGAAAGAGACATCTATAATGCAGGATTTTACTGGTCATGATTCTGAGTTAAGCAGTAATGGTCTCCTTGATAGCTGTGAGAAAAGAAGTTCTTTTACATGGAAAGTGGAGAATTTTCTGTCTTTTAAGGAAATAATGGAGTCTAGAAAAATCTTCAGTAAGTTCTTTCAGGCTGGTGGATGTGAACTTCGGATTGGTGTATACGAGTCATTTGATACCATATGTATTTATTTGGAGAGTGACCAGTCTATCGGTAGTGATCCCGACAAAAACTTCTGGGTCAAATATAGGATGGCTATTGTGAATCAGAAAAACCCGGCGAAGACAGTGTGGAAAGAATCTTCCATCTGTACTAAGACATGGAACAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATGTTAGAAGCAGATGCTGGGTTTCTGGTCCGTGACACTGTTGTATTTGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGACTTAGAGGAGTTTGCACCTGGCTCTTTTAATTTAGGCTTTGATGTTCAGGTTTTAGCTTCAGATGATGATCAGGATGCATTGACCACTGATCCTGAGGAGCTCATCGACTCTGAAGAAAGTGAAGGAATAAATGGAGATGAGGAAGATATTTTCAGAAATCTTCTTTCCAGAGCTGGATTTCATATAACTTGTGGAGATAATCCTTCACAGCCGCAGGTTACTTTGAGAGAGAAACTTTTGATGGATGCTGGGGCAATTGCTGGGTTTCTGACTGGACTTCGGGTTTATCTTGATGATCCCGCCAAAGTGAAGCGTTTGCTTCTTCCTACGAAGCTCTCTGGTACTTGGGATGGAAAGAAGGCCACCAAGACTGATGAGTCTTCTCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTGCAGCAAGCAATCATTGATTTACTCTTGGATATAATGGTTGAGTGCTGCCAACCTTCTGAAGGGGGTTCTGTTGCTGATTCTGTTGATGCAAGCTCAAAACCTTCTCCAGACAGTAGTGGAGCTGCTACTCCACTCAAATGTGATAGAGAAAATGGAGCAACAGTGTCTGCTCAATTTCCTGTTAACGAGAGATTGGGTTCTGTTGTTGAAGATAGCAGTAGTACTTCTGCTGTACAGAACTCTGATTTAAATGCTAATAGTATTCAGGAAAAAGCTCTTCCTGGACAGCCTATTTCTCCACCAGAAACGTCTGCCACTGGTTCAGAAAATACGCCCTTTCGGTCAAAGACAAAGTGGCCAGAACAGTCTGAGGAGCTCTTAGGTTTGATTGTGAACTCGCTAAGAGGTTTGGATGGGGCTGTTCTGCAAGGCTGTCCAGAACCGAGACGGAGACCTCAGTCTGCACAAAAAATTGCTCTTGTATTGGACAAGGCTCCCAAGCATTTGCAAGCAGACCTTGTTGCTCTAGTGCCCAAATTGGTTGAGCATTCCGAACACCCACTGGCTGCATGTGCACTTCTTGAGCGACTTCAAAAGTCTGATGCAGAACCTGCTTTACGAATACCTGTTTTTGGGGCTCTTAGTCAACTGGAGTGCGGCAGTGAAGTGTGGGAACACATACTGTTTCAGTCATTTGAGCTTTTGGCAGATTCAAATGATGAACCCCTTGCTGCAACCATAGATTTTATATTCAAAGCAGCTTCTCAATGTCAACACCTACCTGAAGCAGTTAGGTCTGTTCGTGCCAGGCTGAAGAATCTAGGTCTTGAGGTGTCACCTGGTGTCCTTGACTTTTTGAGTAAGACTATAAATAGTTGGGGTGACATTGCTGAAACCATACTTAGGGACATTGACCGTGACGATGATTATGGTGACAATTTCGCACCTCTTCCATGTAGGATTTTCTTATTTGGTGAACATGGCATTGCTCCTGCCGGTCTGCATGTGATTGATGAGCAGGCTTTCCGTGCTTGTCGCCATTTTTCTGATATTTATATACTGTTTGAGATGTTATCTATTCCTTGTCTTGCCGTTGAAGCATCTCAAACATTTGAGAGAGCTGTAGCTCGAGGTGAAATAGATGCTCAGTCTGTAATGCTAGTATTGGACAGTCGCCTTTCCCAAAGGTTCAATGGTAATGCCATATATGTTTCTGAAAAATTGCAGCATTCAGATAGTGTAGTGGAGGGAGATGTTGGTGAGCAATTGGGAGTTCAAAGGGATGATTTTACTTCAGTTCTTGGACTTGCTGAAACTTTGGCCCTCTCCAGAGATCCACGTGTGAAAGCATTTGTGAAGCTGCTCTACACTATATTGTTTAGGTGGTATGCCAATGAATCTTATCGCGGGAAGATGTTGAAGAGCCTTGTTGACCATGCCACCAACTCTACTGATAATGGCCGTGAAGTAGATTTTGACTTGGATATCTTGGTTAATTTGGTCTGTGAGGAGCAGGAGATAATTAGGCCTGTTTTGAGCATGACGCGTGAGGTTGCTGAACTTGCAAATGTTGACCGGGCTGCTCTATGGCACCAGTTATGTGCTAGTGAAGATGAAATTATCCGCATTCGTGAAGAAAGCAAAACAGAGATTTCCAATATGGCTAGGGAAAAAGCTACTATATCACAGAAGCTAAGTGAGTCTGAGGCCACAAACATTCGTCTCAAGTCTGAAATGAAGGCTGGGATGGATCGGTTTACTCGGGAAAAGAAGGAGCTATCAGAAAATGTTCAAGAAGTTGAGAGTCAGCTTGAGTGGCTTCGCTCAGAGCGGGATGATGAAATAGCAAAGCTGTCTGCTGACAAGAAAGTTCTTCAGGACCGTTTACATGACGTTGACACACAACTTTCTCAATTGAAATCTCGGAAACGTGATGAATTAAAGAAAGTAGTAAAGGAGAAAAATGCACTTGCTGAAAGACTGAAGAATGCCGAAACTGCTCGTAAGAGATTTGATGAAGAGTTGAAAAGATTTGCAACAGAGAATGTTACTCGGAATGAAATCCGACAATCGCTTGAGGATGAAGTTCGTAGATTGACTCAAACAGTTGGGCAAACTGAGGGAGAAAAGCGGGAAAAGGAAGAGCAGGTTGCTAGGTGTGAAGCATATATTGATGGCATGGAATCAAAGTTGCAGGCTTGTCAGCAATATATCCACACACTTGAGACCTCACTTCAGGATGAAATGTCACGACACGCCCCTCTATATGGTGCTGGTCTGGAAGCTCTATCAATAAAAGAATTGGAAACTCTATCACGTATTCATGGAGAAGGGCTGAGGCAGATCCATGCTCTTCAACAGCGTAAAGGTAGTCATGCTGGGAGTCCCCATAATCTCCCGCCCAACCATGTATTATATCCTCCTCCATCGCCCCCAATGGCTGTGGGACTGCCTCCCTTTATCGTCCCAAACGGGGTAGGGATCCACAGCAACGGGCACGTGAATGGTGCACTTGGACCCTGGTTTAACCACTCTTAA 5139 0.4367 MKNITNSDKIKMKHTSSVAVSSLSSAPDQSQPSTSSSASSEHKSALVTSTSTSAAATEDLTISSRDGGGGAAAQETVAVERRDEYSVVCRWTVQNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFTSYRLAIVNVADDSKTIHRDSWHRFSGKKKSHGWCDFTPSSTVFDPKLGFMFNNDSVLITADILIINESVNFTRDNNELQSSLSLSSSSTSSVVASPVSDVLSGKFTWKVHNFTLFKDMIKTQKIMSPVFPAGECNLRISVYQSSVNGVDYLSMCLESKDTDKTVLLSDRSCWCLFRMSVLKQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGTDSGFIVDDNVVFSTSFHVIKELSSFSKNGAVIGGRNVGGTRKSDGHIGKFIWKIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSGDWSCFVSHRLSVVNQKVEDKSVTKESQNRYSKSAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFTGHDSELSSNGLLDSCEKRSSFTWKVENFLSFKEIMESRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSIGSDPDKNFWVKYRMAIVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEEFAPGSFNLGFDVQVLASDDDQDALTTDPEELIDSEESEGINGDEEDIFRNLLSRAGFHITCGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGTWDGKKATKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGGSVADSVDASSKPSPDSSGAATPLKCDRENGATVSAQFPVNERLGSVVEDSSSTSAVQNSDLNANSIQEKALPGQPISPPETSATGSENTPFRSKTKWPEQSEELLGLIVNSLRGLDGAVLQGCPEPRRRPQSAQKIALVLDKAPKHLQADLVALVPKLVEHSEHPLAACALLERLQKSDAEPALRIPVFGALSQLECGSEVWEHILFQSFELLADSNDEPLAATIDFIFKAASQCQHLPEAVRSVRARLKNLGLEVSPGVLDFLSKTINSWGDIAETILRDIDRDDDYGDNFAPLPCRIFLFGEHGIAPAGLHVIDEQAFRACRHFSDIYILFEMLSIPCLAVEASQTFERAVARGEIDAQSVMLVLDSRLSQRFNGNAIYVSEKLQHSDSVVEGDVGEQLGVQRDDFTSVLGLAETLALSRDPRVKAFVKLLYTILFRWYANESYRGKMLKSLVDHATNSTDNGREVDFDLDILVNLVCEEQEIIRPVLSMTREVAELANVDRAALWHQLCASEDEIIRIREESKTEISNMAREKATISQKLSESEATNIRLKSEMKAGMDRFTREKKELSENVQEVESQLEWLRSERDDEIAKLSADKKVLQDRLHDVDTQLSQLKSRKRDELKKVVKEKNALAERLKNAETARKRFDEELKRFATENVTRNEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLETSLQDEMSRHAPLYGAGLEALSIKELETLSRIHGEGLRQIHALQQRKGSHAGSPHNLPPNHVLYPPPSPPMAVGLPPFIVPNGVGIHSNGHVNGALGPWFNHS 1712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0223 1712 Coils Coil 1556 1583 - -
Lal17g0223 1712 MobiDBLite consensus disorder prediction 1 52 - -
Lal17g0223 1712 MobiDBLite consensus disorder prediction 889 918 - -
Lal17g0223 1712 CDD MATH 90 216 IPR002083 GO:0005515
Lal17g0223 1712 SUPERFAMILY TRAF domain-like 425 566 - -
Lal17g0223 1712 SMART math_3 596 696 IPR002083 GO:0005515
Lal17g0223 1712 SMART math_3 261 374 IPR002083 GO:0005515
Lal17g0223 1712 SMART math_3 429 541 IPR002083 GO:0005515
Lal17g0223 1712 SMART math_3 88 196 IPR002083 GO:0005515
Lal17g0223 1712 CDD MATH 593 715 IPR002083 GO:0005515
Lal17g0223 1712 SUPERFAMILY TRAF domain-like 592 716 - -
Lal17g0223 1712 SUPERFAMILY TRAF domain-like 85 224 - -
Lal17g0223 1712 MobiDBLite consensus disorder prediction 959 987 - -
Lal17g0223 1712 ProSiteProfiles MATH/TRAF domain profile. 424 560 IPR002083 GO:0005515
Lal17g0223 1712 ProSiteProfiles MATH/TRAF domain profile. 86 216 IPR002083 GO:0005515
Lal17g0223 1712 CDD MATH 257 389 IPR002083 GO:0005515
Lal17g0223 1712 MobiDBLite consensus disorder prediction 891 906 - -
Lal17g0223 1712 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 71 223 IPR008974 GO:0005515
Lal17g0223 1712 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 417 569 IPR008974 GO:0005515
Lal17g0223 1712 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 582 717 IPR008974 GO:0005515
Lal17g0223 1712 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 251 399 IPR008974 GO:0005515
Lal17g0223 1712 Coils Coil 1489 1548 - -
Lal17g0223 1712 ProSiteProfiles MATH/TRAF domain profile. 256 393 IPR002083 GO:0005515
Lal17g0223 1712 Pfam MATH domain 456 562 IPR002083 GO:0005515
Lal17g0223 1712 Pfam MATH domain 94 218 IPR002083 GO:0005515
Lal17g0223 1712 Pfam MATH domain 603 711 IPR002083 GO:0005515
Lal17g0223 1712 SUPERFAMILY TRAF domain-like 254 399 - -
Lal17g0223 1712 Coils Coil 1443 1484 - -
Lal17g0223 1712 PANTHER TRAF-LIKE FAMILY PROTEIN 47 1712 - -
Lal17g0223 1712 ProSiteProfiles MATH/TRAF domain profile. 591 715 IPR002083 GO:0005515
Lal17g0223 1712 PANTHER TRAF-LIKE FAMILY PROTEIN 47 1712 - -
Lal17g0223 1712 CDD MATH 425 560 IPR002083 GO:0005515
Lal17g0223 1712 MobiDBLite consensus disorder prediction 959 984 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0223 Lal-Chr17 1387312 1396757 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0223 - - ccaj:109798115 2838.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0223 17 1387312 1396757 Lal17g0223 17 1387312 1396757 ECH
Lal17g0223 17 1387312 1396757 Lal21g0328 21 2181912 2190284 LSH
Lal17g0223 17 1387312 1396757 Lal4g0212 4 1316370 1327052 LSH