Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0057 ATGGATTCCCTCTCTCTCTTCTGCACCGGCGCTCTCCTCGCCGGCGCTCTCTACTGGTTCGTCTGTATTCTCGGCCCCGCCGAACAAAAGGGCAAACGTGCCACCGATCTCTCCGGTGGTTCAATCTCCGCCGAGAAAGTCCTCGACAACTACAACAACTACTGGTCCTTCTTCCGCCGCCCCAAGGAGATCGAAACCGCCGATAAAGTCCCTGATTTCGTCGACACCTTCTACAACCTCGTTACTGACATCTACGAGTGGGGATGGGGCCAATCCTTCCATTTCTCCCCTTCTATCCCGGGGAAATCCCACCGTGACGCCACGCGCCTCCATGAAGAGATGGCCGTGGATCTCATTGAGGCCAAACCTGGACAGAAGATCCTGGACGTAGGTTGCGGCGTTGGTGGTCCCATGCGTGCAATCGCAGCCCACTCGCGTGCAAACGTTGTGGGAATCACGATCAACGAGTACCAAGTTAAGAGAGCCAAATTGCACAACAAAAAGTCAGGGCTCGATTCACTCTGTGAGGTGGTATGTGGAAACTTCCTGAAGATGCCATTCTCAGACAACAGTTTCGATGGCGCGTACTCAATCGAGGCCACTTGTCACGCTCCGAAGCTCGAAGAGGTATACGCTGAGATCTTTAGGGTTTTGAAGCCAGGTTCTCTTTACGTCTCTTACGAGTGGGTGACGACAGACAAATACAATTCTGAAAACGATGAACACGTGGAGGTCATTCAGGGAATAGAGAGGGGTGACGCTTTGCCTGGGCTTAGAAGTTATGCTGATATTACTAAAACAGCGAAGAACGTTGGGTTCGAGATTGTGAAGGAAAAAGATCTGGCTAAACCACCGGCTCAACCATGGTGGAGCCGATTAAAGATGGGTCGAGTCGCATACTGGAGGAACCACATTGTGGTAACTGTTCTATCTGCTTTGGGAATTGCACCTAAAGGAACCGTTGATGTTCATGAGATGTTGTTTCACACTGCTGATCATTTGACACGTGGGGGTGAATCTGGTATTTTCTCTCCGATGCACATGATCCTCTGCAGAAAACCCAATTCATAA 1071 0.5079 MDSLSLFCTGALLAGALYWFVCILGPAEQKGKRATDLSGGSISAEKVLDNYNNYWSFFRRPKEIETADKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIEAKPGQKILDVGCGVGGPMRAIAAHSRANVVGITINEYQVKRAKLHNKKSGLDSLCEVVCGNFLKMPFSDNSFDGAYSIEATCHAPKLEEVYAEIFRVLKPGSLYVSYEWVTTDKYNSENDEHVEVIQGIERGDALPGLRSYADITKTAKNVGFEIVKEKDLAKPPAQPWWSRLKMGRVAYWRNHIVVTVLSALGIAPKGTVDVHEMLFHTADHLTRGGESGIFSPMHMILCRKPNS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0057 356 PANTHER - 1 355 IPR044625 GO:0008168|GO:0032259
Lal4g0057 356 CDD AdoMet_MTases 126 230 - -
Lal4g0057 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 77 354 IPR029063 -
Lal4g0057 356 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 77 354 IPR030384 GO:0008168
Lal4g0057 356 Pfam Sterol methyltransferase C-terminal 291 354 IPR013705 GO:0006694|GO:0008168
Lal4g0057 356 Gene3D Vaccinia Virus protein VP39 45 311 IPR029063 -
Lal4g0057 356 PANTHER 24-METHYLENESTEROL C-METHYLTRANSFERASE 3 1 355 - -
Lal4g0057 356 Pfam Methyltransferase domain 128 224 IPR013216 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0057 Lal-Chr4 327986 329056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0057 116 280 Acyl Lipid Metabolism Gene Families AT1G73600 30.303 3.82e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0057 K08242 - gmx:100791154 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0057 4 327986 329056 Lal4g0057 4 327986 329056 ECH
Lal17g0050 17 299729 300802 Lal4g0057 4 327986 329056 LSH
Lal21g0102 21 700420 701538 Lal4g0057 4 327986 329056 LSH