Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0050 ATGGACTTCCTCTCTCTCTTTTGCACTGCCGCTCTCCTCGCCGGCGGCCTCTACTGGTTCGTCTGCATTCTCGGCCCCGCCGAACAGAAGGGCAAACGCGCCACCGATCTCTCTGGTGGCTCCATCTCTGCCGATAAAGTCCAAGACAACTACAATGACTACTGGTCCTTCTTTCGCCGCCCCAAGGAGATCGAAACCACCGACAAGGTCCCCGACTTCGTCGACACCTTCTATAATCTTGTTACCGACATCTACGAGTGGGGTTGGGGACAGTCCTTCCACTTCTCTCCTTCCATCCCCGGGAAATCCCACCGTGACGCCACGCGCCTCCATGAAGAGATGGCCGTCGATCTCATCGAGGCCAAACCTGGACACAAGATCCTCGATGTAGGTTGCGGCGTTGGCGGGCCCATGCGTGCAATCGCGTCCCACTCAGGCGCAAACGTGGTGGGCATCACGATCAACGAATACCAAGTCAACAGAGCCAAATTGCACAACAAAAAAGCAGGCCTTGATTCTCTCTGCGAGGTTGTGTGTGGGAATTTCCTCGAGATGCCGTTTCAAGACAACAGTTTCGACGGCGCGTACTCGATCGAGGCCACGTGTCACGCGCCGAAGCTGGAAGAGGTATACGCGGAGATCTTTAGGGTTTTGAAACCAGGTGGTCTTTACGTTTCGTACGAGTGGGTGACGACAGACAAGTATGAAAGTGATAACGCAGAACACGTGGCAGCCATTCAGGGGATAGAGAGGGGTGACGCTTTGCCTGGTTTGAGGAGCTACAGTGATATTGGTGAAGCAGCTAAGAAGGTTGGGTTCGAGATAGTGAAAGAGAAAGATCTGGGTAAAGCACCGGCTGGACCGTGGTGGAACAGGTTGAAGATGGGTCGAGTAGCTTATTGGAGGAACCACATTGTTGTTACTATTCTCGCTGCTTTTGGAATTGCACCTAAAGGAACCGTTGATGTTCATGAGATGTTGTGTAACACTGTTCACCATTTGACTCGTGGGGGTGAATCTGGTATTTTCTCTCCGATGCATATGATTCTTTGCAGAAAACCATCCCATTCATAA 1074 0.5214 MDFLSLFCTAALLAGGLYWFVCILGPAEQKGKRATDLSGGSISADKVQDNYNDYWSFFRRPKEIETTDKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIEAKPGHKILDVGCGVGGPMRAIASHSGANVVGITINEYQVNRAKLHNKKAGLDSLCEVVCGNFLEMPFQDNSFDGAYSIEATCHAPKLEEVYAEIFRVLKPGGLYVSYEWVTTDKYESDNAEHVAAIQGIERGDALPGLRSYSDIGEAAKKVGFEIVKEKDLGKAPAGPWWNRLKMGRVAYWRNHIVVTILAAFGIAPKGTVDVHEMLCNTVHHLTRGGESGIFSPMHMILCRKPSHS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0050 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 77 354 IPR029063 -
Lal17g0050 357 PANTHER 24-METHYLENESTEROL C-METHYLTRANSFERASE 3 1 355 - -
Lal17g0050 357 CDD AdoMet_MTases 126 230 - -
Lal17g0050 357 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 77 354 IPR030384 GO:0008168
Lal17g0050 357 Pfam Sterol methyltransferase C-terminal 292 354 IPR013705 GO:0006694|GO:0008168
Lal17g0050 357 Gene3D Vaccinia Virus protein VP39 44 310 IPR029063 -
Lal17g0050 357 PANTHER - 1 355 IPR044625 GO:0008168|GO:0032259
Lal17g0050 357 Pfam Methyltransferase domain 128 225 IPR013216 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0050 Lal-Chr17 299729 300802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0050 116 280 Acyl Lipid Metabolism Gene Families AT1G73600 30.303 4.91e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0050 K08242 - gmx:100791154 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0050 17 299729 300802 Lal17g0050 17 299729 300802 ECH
Lal17g0050 17 299729 300802 Lal21g0102 21 700420 701538 LSH
Lal17g0050 17 299729 300802 Lal4g0057 4 327986 329056 LSH