Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1409 ATGAAGAAGGATTCAACACTTGTGGATGTGGTTCTGGTACTTGCATTGTTCTGTTGCAGCACATGGCCAGTGTATAGCAGCAACTCACTTTGCAAACACACAAACTTTGACGAAATTCGAAGGCCTCATAGTGTTAGTATCACAGAATTTGGTGCAGTTGGAGATGGAATTACTCTCAACACAAAAGCATTTCAGAATGCAATCTTCTACTTAAACTCATTTGCAGACAAAGGTGGAGCAAAGCTTTTTGTCCCGGCCGGTCGGTGGTTAACCGGTAGTTTCGATCTCATCAGCCATCTAACTTTGTCCTTGGACAAGGATGCAGTAATTCTTGGATCAACAGATATCGACGATTGGCCAGTTGTTGATCCTCTACCATCATATGGGCGAGGAAGGGAATTGCCCGGTGGAAGGCATATGAGCCTTATTTACGGCCGAAATTTGACTGATGTCATCATTACAGGTAATAATGGAACTATTGATGGTCAAGGGAGTATATGGTGGAGCCGATTTAGGAACAAAACTTTGGATTACACGCGTCCGCATTTGATAGAATTGATGAATTCAACAGGAGTTCTCATTTCGAATTTAATCTTCTTGAACTCTCCATTTTGGACTATTCATCCTGTATATTGCAGCCAAGTTACAATTCAGAATGTCACCGTCCTCGCGCCTCTTGATTCGCCAAACACGGATGGGATCGATCCAGACTCTTCAGATCATGTATGCATTGAAGACTGTTACATAAGCACAGGTGATGATTTGATTGCCATAAAAAGCGGGTGGGACGAGTACGGCATCGCGTTCGATCGACCGAGCACAAACATAATAATCCATAGACTCACAGGGAAAACTCAAACAAGTGCAGGGATTGCAATTGGAAGTGAAATGTCTGGTGGTATATCAGAAGTCCATGCAGAAAACATTCACTTCTATGATTCATATAATGCTATCAGAATAAAAACTTCTCCTGGAAGAGGTGGTTATGTTAGAAATATCTATATTTCTAACATGTCTTTGGTTAATGTTGATATTGCTATTAGATTCACTGGCTTATATGGTGAACACCCAGATGAATATTATAACCCAAATGCACTACCTATAATAGAAAAGATAACAATTGAGGATGTTATAGGACAAAATATAAAACATGCAGGTATTATAGAAGGCATAAAAGGTGACAATTTTATCAACATATGTTTATCAAACATTAACCTTAATGTGACATCAACATATCCATGGAACTGTTCCTATGTTGAAGGATTCTCTGACTTGGTTGTGCCTCAAGCTTGTGAGTCTCTTAAGGAAAGAATGTTCACTGATCATTGTTCAGATTGTTACAATTTATCAAAATGCATAGCAAGTTGGTAA 1371 0.3939 MKKDSTLVDVVLVLALFCCSTWPVYSSNSLCKHTNFDEIRRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLSLDKDAVILGSTDIDDWPVVDPLPSYGRGRELPGGRHMSLIYGRNLTDVIITGNNGTIDGQGSIWWSRFRNKTLDYTRPHLIELMNSTGVLISNLIFLNSPFWTIHPVYCSQVTIQNVTVLAPLDSPNTDGIDPDSSDHVCIEDCYISTGDDLIAIKSGWDEYGIAFDRPSTNIIIHRLTGKTQTSAGIAIGSEMSGGISEVHAENIHFYDSYNAIRIKTSPGRGGYVRNIYISNMSLVNVDIAIRFTGLYGEHPDEYYNPNALPIIEKITIEDVIGQNIKHAGIIEGIKGDNFINICLSNINLNVTSTYPWNCSYVEGFSDLVVPQACESLKERMFTDHCSDCYNLSKCIASW 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1409 456 SMART pbh1 301 322 IPR006626 -
Lal3g1409 456 SMART pbh1 273 295 IPR006626 -
Lal3g1409 456 SMART pbh1 330 351 IPR006626 -
Lal3g1409 456 SMART pbh1 212 238 IPR006626 -
Lal3g1409 456 SMART pbh1 239 271 IPR006626 -
Lal3g1409 456 Pfam Glycosyl hydrolases family 28 141 420 IPR000743 GO:0004650|GO:0005975
Lal3g1409 456 SUPERFAMILY Pectin lyase-like 38 435 IPR011050 -
Lal3g1409 456 Gene3D - 27 422 IPR012334 -
Lal3g1409 456 PANTHER OS07G0245200 PROTEIN 7 442 - -
Lal3g1409 456 PANTHER PECTIN LYASE-RELATED 7 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1409 Lal-Chr3 20006978 20010501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1409 1 451 Glycoside Hydrolase AT3G62110 66.374 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1409 - - gmx:100817309 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1409 3 20006978 20010501 Lal18g0395 18 3356198 3360255 LSH
Lal3g1409 3 20006978 20010501 Lal13g0559 13 3650452 3654278 PCT
Lal13g0559 13 3650452 3654278 Lal3g1409 3 20006978 20010501 PCT