Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0559 ATGAAGAGACCTTCAACTCTGGTGTATGTGACTCTTTTACTTGCGTTGTTCAGTTGTTCCCCATGGACAGTGTGGAGCAGCTCACTCTGCCATGAAGTAAACTCAGAGGTTGCTCGGCCTCACAGCGTCAGTATTACCGACTTTGGAGCAGTGGGCGATGGGGTCACACTCAATACAAAAGCATTTCAGAATGCCATCTTCTACCTAAATTCATTTTCAGACAAAGGTGGAGCAAAGCTTTTTGTCCCGGCTGGCCAGTGGCTGACAGGAAGTTTTGATCTTATCAGCCATCTAACTTTGTCATTGGATAAGGATGCAGTAATTCTTGGATCAAATAACACTGATGATTGGCCAGTTGTGGATCCTCTACCATCGTATGGCCGAGGAAGGGAGTTGCCGGGTGGAAGGCATAAAAGCCTCATTTATGGGCGCAATTTGACTGATGTCGTCATAACGGGTAATAATGGCACTATAGATGGTCAAGGAAGTATCTGGTGGAGCAGGTTTCAGAACAAAACATTGAACTATACACGCCCCCATTTGGTTGAGTTGATGAATTCAACTGGGATTCACATTGCAAACCTAACTTTCATGAATTCACCATTTTGGACTATTCACCCTGTATATTGCAGCCATGTTACAGTTCAGAATGTCACAATCCTTGCTCCTCTTAGTTCACCGAACACAGATGGGATTGATCCAGATTCATCAGACAATGTATGCATTGAAGACTGTTACATAAGCACTGGTGATGATTTAATTTCCATCAAAAGTGGGTGGGATGAATATGGGATTTCATTCGGTCGTCCCAGTACGAACATTATTATCCACAGGCTTGTCGGGCAAACAACAAGTGCAGGGATTGCTATTGGAAGTGAGATGTCTGGAGGTGTATCAGAAGTCCATGCAGAAGATATTCAGATTTTTGATTCACGCAGTGCAATCAGAATAAAAACTTCTCCTGGCAGGGGCGGTTATATAAGAAACGTCTATATCGCTAACTTGACCTTGGCTAATGTAGATATTGCTATTAGGTTCAGCGGTTTATACGGAGAACATCCGGATGATGCTTATGACCCAGATGCTCTACCTGTAATAGAAAGGATTACTGTCACAGATGTGATTGGGGAAAATGTCAACCGCGCAGGCCTTTTACAGGGTATACAAGGTGACCATTTTGTCAATATCTGTCTATTAAACATCACCCTTAGTGTGAGCAAAAAGGTTCCATGGAACTGCTCTTACGTTAAAGGTTACTCAGACTTGGTTTCTCCAGAAATTTGTGAGCCTCTGAAAGAGAGAATATTCCCCGAGCATTCTTCAGACTGTTACTATTTATCAAATTCCTTGAAGAGTTCGAGTAATCGGAACAAGGGTGGTTGGTTGATGTCTTGGTAA 1398 0.4292 MKRPSTLVYVTLLLALFSCSPWTVWSSSLCHEVNSEVARPHSVSITDFGAVGDGVTLNTKAFQNAIFYLNSFSDKGGAKLFVPAGQWLTGSFDLISHLTLSLDKDAVILGSNNTDDWPVVDPLPSYGRGRELPGGRHKSLIYGRNLTDVVITGNNGTIDGQGSIWWSRFQNKTLNYTRPHLVELMNSTGIHIANLTFMNSPFWTIHPVYCSHVTVQNVTILAPLSSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDEYGISFGRPSTNIIIHRLVGQTTSAGIAIGSEMSGGVSEVHAEDIQIFDSRSAIRIKTSPGRGGYIRNVYIANLTLANVDIAIRFSGLYGEHPDDAYDPDALPVIERITVTDVIGENVNRAGLLQGIQGDHFVNICLLNITLSVSKKVPWNCSYVKGYSDLVSPEICEPLKERIFPEHSSDCYYLSNSLKSSSNRNKGGWLMSW 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0559 465 PANTHER PECTIN LYASE-RELATED 16 448 - -
Lal13g0559 465 Pfam Glycosyl hydrolases family 28 135 417 IPR000743 GO:0004650|GO:0005975
Lal13g0559 465 PANTHER OS07G0245200 PROTEIN 16 448 - -
Lal13g0559 465 SMART pbh1 298 319 IPR006626 -
Lal13g0559 465 SMART pbh1 210 236 IPR006626 -
Lal13g0559 465 SMART pbh1 327 348 IPR006626 -
Lal13g0559 465 SMART pbh1 237 269 IPR006626 -
Lal13g0559 465 SMART pbh1 271 292 IPR006626 -
Lal13g0559 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lal13g0559 465 Gene3D - 23 418 IPR012334 -
Lal13g0559 465 SUPERFAMILY Pectin lyase-like 34 430 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0559 Lal-Chr13 3650452 3654278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0559 1 465 Glycoside Hydrolase AT3G62110 69.767 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0559 - - gmx:100778981 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0559 13 3650452 3654278 Lal13g0559 13 3650452 3654278 ECH
Lal3g1409 3 20006978 20010501 Lal13g0559 13 3650452 3654278 PCT
Lal18g0395 18 3356198 3360255 Lal13g0559 13 3650452 3654278 PCT
Lal13g0559 13 3650452 3654278 Lal3g1409 3 20006978 20010501 PCT
Lal13g0559 13 3650452 3654278 Lal18g0395 18 3356198 3360255 PCT