Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0395 ATGAGGAGACCTTCAATACTTGTGAATGTGGTCCTGGTACTTGCATTGTTCAATTGTAGCACATGGACAGTGTGGAGCAGAAGCGGCTCACTTTGCAAACCTAAAAACTTTGAGGAAATTCGACGGCCTCATAGTGTCAGTATCACTGATTTTGGAGCAGTAGGGGATGGAGTCACTCTCAACACAAAAGCATTTCAGAATGCCATCTTCTACCTAAACTCATTTGCAGATAAAGGAGGAGCAAAGCTTTTTGTCCCGGTTGGCCGATGGTTAACTGGTAGTTTTGATCTCATCAGTCATCTAACTCTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGGACTTCGCCGATTGGCCAGTTGTTGATCCTTTACCATCATACGGGCGAGGAAGGGAATTGCCGGGTCGAAGACACAACAGCCTCATTTATGGCTACAATCTGACTGATGTCATCATAACAGGTGACAATGGAACTATTGATGGTCAAGGGAGTATCTGGTGGAAAAGTTTTAAGAACAAAACATTGGATTATACACGTCCACATATGGTCGAGTTGATAAATTCAACAAGTATTCTGATTTCAAATTTGACCGTTTTGAATTCTCCATTTTGGACCATTCATCCTGTATATTGCAGCGATGTTACGGTTCAGAATGTCACCATCATTTCTCCTCTTAATTCACCAAACACAGATGGAATTGATCCAGACTCTTCAGATGAAGTATGCATTGAAGACTGTTACATAAGCACCGGTGATGATCTGATTTCCATAAAAAGTGGGTGGGATGAGTACGGCATTGCATTCGGTCGTCCAAGCAAAAACATTATTATCCATCGACTCAGCGGTAGAACTCAAGCCAGTTCAGGGATTGCTATTGGGAGTGAGATGTCTGGTGGTGTATCAGACGTTTTTGCCGAAGATATTCACATGTTCGATTCGAACAATTCTATCAGAATAAAAACTTCTCCTGGAAGGGGTGGTTATGTTAGAAATATCTATATATCTAATGTGACATTGGTAAATGTTACTACTGCTATTAGGCTTACTGGTATATATGGCGAACATCCAGATGATGGTTATGACCCAAATGCACGACCCGTAATAGAAAGGATTACAATTAAGAATGTTATAGGAGAACAAATAAAACATGCAGGTATTATACAGGGCATAGAAGGTGACAATTTTGTTAACATATGCCTCTCAAACATTATCCTTAATGTGACATCAAGCTATGCATGGAACTGCTCTAATGTTCAAGGATACTCTGACAAGGTTTTGCCAGAAGTTTGTGGCCAATTTAAGGAAAGAATATTCCCTGATCATTGTTCAGACTGTTACCATTTGTCGGATCCCGAGCCGGGTTCAAATGACTAA 1380 0.408 MRRPSILVNVVLVLALFNCSTWTVWSRSGSLCKPKNFEEIRRPHSVSITDFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPVGRWLTGSFDLISHLTLWLDKDAVILGSTDFADWPVVDPLPSYGRGRELPGRRHNSLIYGYNLTDVIITGDNGTIDGQGSIWWKSFKNKTLDYTRPHMVELINSTSILISNLTVLNSPFWTIHPVYCSDVTVQNVTIISPLNSPNTDGIDPDSSDEVCIEDCYISTGDDLISIKSGWDEYGIAFGRPSKNIIIHRLSGRTQASSGIAIGSEMSGGVSDVFAEDIHMFDSNNSIRIKTSPGRGGYVRNIYISNVTLVNVTTAIRLTGIYGEHPDDGYDPNARPVIERITIKNVIGEQIKHAGIIQGIEGDNFVNICLSNIILNVTSSYAWNCSNVQGYSDKVLPEVCGQFKERIFPDHCSDCYHLSDPEPGSND 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0395 459 SMART pbh1 274 296 IPR006626 -
Lal18g0395 459 SMART pbh1 302 323 IPR006626 -
Lal18g0395 459 SMART pbh1 240 272 IPR006626 -
Lal18g0395 459 SMART pbh1 331 352 IPR006626 -
Lal18g0395 459 SMART pbh1 213 239 IPR006626 -
Lal18g0395 459 PANTHER OS07G0245200 PROTEIN 7 451 - -
Lal18g0395 459 PANTHER PECTIN LYASE-RELATED 7 451 - -
Lal18g0395 459 Pfam Glycosyl hydrolases family 28 141 421 IPR000743 GO:0004650|GO:0005975
Lal18g0395 459 SUPERFAMILY Pectin lyase-like 40 434 IPR011050 -
Lal18g0395 459 Gene3D - 33 428 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0395 Lal-Chr18 3356198 3360255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0395 1 452 Glycoside Hydrolase AT3G62110 66.812 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0395 - - gmx:100782602 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0395 18 3356198 3360255 Lal18g0395 18 3356198 3360255 ECH
Lal3g1409 3 20006978 20010501 Lal18g0395 18 3356198 3360255 LSH
Lal18g0395 18 3356198 3360255 Lal13g0559 13 3650452 3654278 PCT
Lal13g0559 13 3650452 3654278 Lal18g0395 18 3356198 3360255 PCT