Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0878 ATGGAGCCTCACACTTCATCATTTGTATCCAAAGCGAGAACCGCGCTTCATTCTGCGGCTGCGAAAGCGGAGCGTGTTCTCAATGACTTCAAATCCGATCGAGATTCTGATAAACAATCCAATGATGATTTTGGAGGGAAGCAGCGACATGAATCTCCTCGGAATGATAACGAGTCTAAGCTTCTCAGTGAATTGAAGCATATAAAGTGGAGACCTCCACATATAGGAATAAAGCAAGATTGGCAAGATAAAATTAACAATATTCGGAAAGGGAGAAAAGAAGTCGAAGATACAGATAAAATCCGAGACACAAACATGGCCGCTGTTCCTTTTTATGATGAAAATTTGTACATCCTGAATATGAAAAATGATGCTGATATCAAGGCTTCAGAAGCAATTCCCTCAGTTGAAGGCTTAATTACCGCGACTAAAGACCCTATTCCTCCATCTTCTGTCATCAAGCAATTGGCTATAGCTGTTGAGGCTGGAAGGAAAACAAATTCAATGAAAGATTTTGCAGCTTCATCCGAAGGTTCTTCACCTGCCAAAGAGAGGGCAGGCTTAACTCTCTCTGCAATGAAGGCTTTAGTGTTGCGCGAAAAGGAGGATACCCTTACCTCTGAGTTTAGTAGCAATGAGAAAGTTGGGTTCTTGATTAATTCTCTGTTTGATCCAGTCGGAGAGTTCCTCATAAGGAAGGTAAACTCTTATCCAGATGAAGCTTGCATGACATCTTTGCCAAGTGATATTCATGGTGCTCCTCCAGAAAGCTTGATTGTTAAGTTAGCTGAAGTCATTGGAAACTTCAAGACGCTTAGAAAAATGGCTCTTTTCTGGTGCAGGATTGTTGTCGAACTGAGAAAATTTTGGTCTGAAGAACAACATTTACCTGGCGTTCCCCCAGATGACATTCCAGATCTGAAGTCATGTCTTCTATATCAACAATTTCAAGTAATTAATTGTTGCATCTCTCGGAAAAGGCGTCATATTATTGCCACTGAATCTCTTGATTCTCTGATGATGGAAGCCAATTCAAATGTAGAAGAATCAGAAAACAATACCAAGAAAATTCCTGCAAACCATTTATTATATGCTAAATTAAGTACAGGGGAGCTTGTTCTTCGACTAGGTGCAGAGTGCCCATCTGGAGATATGACATTGTTGGAAACTGGCGAGCCTGTGTACTCTCCTGTCACTCAGGAAGGACCTCTGCTTACAGAAGATCTTATCAAAGAGACCGAGGAGTTTGTGCTGCGGACAGGGAGTGTTGGTGCTGGGTGCTCTCATCTCCTCTCTGATATGCAGGCTTTCAAGGCTGCAAATCCTGGTTGCATTTTGGAAGATTTTGTAAGATGGCACTCTCCTCCTGATTGGACAGAAAGTGAGGCAGGTACTGAGGACAGTGATTTTTTTGATAGTAGTGAGTCATTGTCTACCAGAGGTCAGCTAAGTCTGCGAATGCAAAAAGAAGGCAATTTGTGGCGCGAATTGTGGGAAACTTCTAAACCAGTACCAGCTGTTAAACAGGCACCTCTCTTTGATGAGGATTTGGCAGTGGAGGGCATCCTCAATGCATTTGAGGACATCCGGCCTTCTGAGCTTTTTGAACAGCTGTTTATTTCTTTACTTGGTGTAGGATTAGCAATTGCTGAACCTATGCTGTCTGGTGAAAGTGACTTCTCAAAGTTGTTCAATGAATGCAAGGATTATGTAGTTACAACTTGTCAAAGCAACAAATTGAGTGAGAAAGTTGATGAGCTTGTTCAGGTATATGAAACAGTGGAGAAAATGTTACTGAAGCCTGAGGAAGTAATAAAGATGATGAAGAAAGCAGAAGAATCTAGTATGACTCCTGGTGAACCAAAGCGTCGGTTTAAGAGACTCCTCCTTATGTTTGGGGGTAAAGATAAAATGCTAACGAGTCCTGTCTCGAAGGATCAGACAAATGACGAAGAAAACCCATTTCGACAATCCTTTTCCAGTTTCTTCGACAGCAAGTCATCTTTATTTTCAAAGAAGCCTCCTAAGCATGGAAGTCTTTTCCCTGCTGAGAATCCTCCTTGTTTGGAAAGTGATTGGAAAGTTGTCTAG 2091 0.4175 MEPHTSSFVSKARTALHSAAAKAERVLNDFKSDRDSDKQSNDDFGGKQRHESPRNDNESKLLSELKHIKWRPPHIGIKQDWQDKINNIRKGRKEVEDTDKIRDTNMAAVPFYDENLYILNMKNDADIKASEAIPSVEGLITATKDPIPPSSVIKQLAIAVEAGRKTNSMKDFAASSEGSSPAKERAGLTLSAMKALVLREKEDTLTSEFSSNEKVGFLINSLFDPVGEFLIRKVNSYPDEACMTSLPSDIHGAPPESLIVKLAEVIGNFKTLRKMALFWCRIVVELRKFWSEEQHLPGVPPDDIPDLKSCLLYQQFQVINCCISRKRRHIIATESLDSLMMEANSNVEESENNTKKIPANHLLYAKLSTGELVLRLGAECPSGDMTLLETGEPVYSPVTQEGPLLTEDLIKETEEFVLRTGSVGAGCSHLLSDMQAFKAANPGCILEDFVRWHSPPDWTESEAGTEDSDFFDSSESLSTRGQLSLRMQKEGNLWRELWETSKPVPAVKQAPLFDEDLAVEGILNAFEDIRPSELFEQLFISLLGVGLAIAEPMLSGESDFSKLFNECKDYVVTTCQSNKLSEKVDELVQVYETVEKMLLKPEEVIKMMKKAEESSMTPGEPKRRFKRLLLMFGGKDKMLTSPVSKDQTNDEENPFRQSFSSFFDSKSSLFSKKPPKHGSLFPAENPPCLESDWKVV 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0878 696 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 5 695 IPR045700 GO:0005096|GO:0043547
Lal3g0878 696 Coils Coil 78 98 - -
Lal3g0878 696 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 5 695 - -
Lal3g0878 696 Pfam Rab3 GTPase-activating protein catalytic subunit 375 527 IPR026147 -
Lal3g0878 696 MobiDBLite consensus disorder prediction 26 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0878 Lal-Chr3 8409644 8421682 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0878 K18270 - gmx:100800515 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0878 3 8409644 8421682 Lal3g0878 3 8409644 8421682 ECH
Lal3g0878 3 8409644 8421682 Lal18g1572 18 17352298 17362025 LSH
Lal3g0878 3 8409644 8421682 Lal18g1572 18 17352298 17362025 PCT
Lal3g0878 3 8409644 8421682 Lal22g0079 22 489145 496329 PCT
Lal18g1572 18 17352298 17362025 Lal3g0878 3 8409644 8421682 PCT
Lal22g0079 22 489145 496329 Lal3g0878 3 8409644 8421682 PCT