Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0079 ATGGAGGATTCAGCCACAAATTCTATCATGTCCAAAGCGAGGAGTGCCTTCCATTCCGCTGCTTCAAAAGCGGAGCGTGTTTTCAAATCTAATCAAGATCATGACAATAAGCATTTGATCTCACAACCGGAACTTGATTCTCCTCACAAACACAATCTTTCCAGGCTTTGCAGTGAATTGAAGCACATAAAGTGGAGGACTCCACATATAGGAATTAAGCAGGATTGGCAAGAAAGAATTAAGAACATCCGGATAGGGAGAAAAGAAGTTCAAGATACAGATAAAATTGGGGACCCAGACATGGCAGTTCCATTTTATGATGAAAACTTGTTCATCCTAAATATGAAAAATGATCTTGAGGCCAAGGCTTCAGAAGTAATTCCCTTGGTTGAAAGCTTAACTGCTGCAAACATAGACCCCATTCCTCCGTCGTCGGTACTGAAGCAATTGGCTATTTCTGTTGAGGCTGGAAGTAAAACAAAGTCCATTAAAGATTTTATTGCTTCATCTGGAAGTTCTTCACCTGCCATAGAGAGGGCAGCCTCAACTCTTTCTGCGGTAAAGGCTTTAGTGTTGCGTGAAAAGGAGGACAGACTAACCTCTGAGTTTAGTAACGATGAGAGAGTTTTGCATCTGATTAGTTCTCTATTTGATCCAGAGGGAGATTTTCTCAAAAGGAAGATCAACTCCAATCCTGAGGAAACTGCCATAACATCTTTGGCAAGAGATATTCATGGTGCTCCTCCTGAAAGCCTGGTTGTTAAGCTAGCTGAAGTGATTGGGAACTTCAAGACTGTTCGGAAAATGGCACTTTTCTGGCGCAGATTTATTGTTGAACTAGGAAAACTTTGGTCTGAAGAACAACATTTACCTGGAGTCCCCAGGAATGAGATCCCGGATCTGAAATCATGTCTTCTATATCAACAGTTTCAAGTAGTTAATTGTTGCATCTCTCGGAAAAGGCTCCACATTATTGCAACCGAATCTCTTGAGTCTATGATGAAGGAAGCGGACTCAAATATAAAACACCCAGATAGTTATATTGATGGAAGTCCTGCAAGCCCTGTTCTATATGCTAGATTAAGTACTGGGGAGCTTGTTCTTCGAATTGGTGCAGATTGCCTGGCTGGAGATCTAATGTTGTTGGAAACAGGCGAGCCTGTGTACTCTCCTTTCACCCAGGAAGGACCTTTGCTTACAGAAGATCTAATCAGAGAACATGAGGAGTTTGTGCTGAGGACAGGGAGTGTTGGTGCTGGGTGCTCTCAACTCCTCTCCGATATGCAGGCTTTCAAGGCTGCAAATCCTGGATGTATTTTGGAGGATTTTGTAAGGTGGCATTCTCCTCCTGATTGGTCAGAAAATGAGGCAATTACTGAGGATAGTGATGTTTTTTATGGTGGTGAGTTGTCTACCAGAGGTCAGCTAAGTCGACGAATGCAAAAAGAAGGTCAGCTAAGTCGACGAATGCAAAAAGAAGGTAATTTGTGGCGTCAATTGTGGGAAACTTCTAAACCTGTCCCTGCTGTTAAACAGACACCTCTCTTTGATGAGGATTTGGCAGTGGAGAGTATTTTCAATGCATTTGATGACATCCATCCTTCGGAGCTTTTTGGGCAGCTGTTTGTTTCTTTACTTGGTTTAGGATTTACAATTGCAGAACCTATGTTATCTGGTAGCGATGACTTGTTAAAGTTGTTCTACGACTGCAAAGAGTATGTAGTTGCAACATGCCAAAGCAACAGATGGTGCGAGAAAGTCCATGACCTTGTCCAGGTATATGAAACAGTGGAGACAATTTTACTGAATCCTCAAGAATCACTAAATATGATAAAGCTAACAGAAGAACTGGCCATAAATACTGAAGAACCAAAGAGCAAATTTAAGAGGCTTGGCCTTATATTCGGCGGGAAAGATATACTATTGAGAAAGGCAATATCAAATGATCAGATAAATGATGAAGAAAAGTCAATTCTACAATCTTTGTCTAGTTTCTTCGAGAGCAAGTCATCTCTATTTTCAAAGAAGCTTACCAAGTCTCGATGCCCATCTCCTGAGAAACCTCGTTCTCTCATAACTGATTGGACAACAGTTTAG 2097 0.4149 MEDSATNSIMSKARSAFHSAASKAERVFKSNQDHDNKHLISQPELDSPHKHNLSRLCSELKHIKWRTPHIGIKQDWQERIKNIRIGRKEVQDTDKIGDPDMAVPFYDENLFILNMKNDLEAKASEVIPLVESLTAANIDPIPPSSVLKQLAISVEAGSKTKSIKDFIASSGSSSPAIERAASTLSAVKALVLREKEDRLTSEFSNDERVLHLISSLFDPEGDFLKRKINSNPEETAITSLARDIHGAPPESLVVKLAEVIGNFKTVRKMALFWRRFIVELGKLWSEEQHLPGVPRNEIPDLKSCLLYQQFQVVNCCISRKRLHIIATESLESMMKEADSNIKHPDSYIDGSPASPVLYARLSTGELVLRIGADCLAGDLMLLETGEPVYSPFTQEGPLLTEDLIREHEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWSENEAITEDSDVFYGGELSTRGQLSRRMQKEGQLSRRMQKEGNLWRQLWETSKPVPAVKQTPLFDEDLAVESIFNAFDDIHPSELFGQLFVSLLGLGFTIAEPMLSGSDDLLKLFYDCKEYVVATCQSNRWCEKVHDLVQVYETVETILLNPQESLNMIKLTEELAINTEEPKSKFKRLGLIFGGKDILLRKAISNDQINDEEKSILQSLSSFFESKSSLFSKKLTKSRCPSPEKPRSLITDWTTV 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0079 698 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 6 488 IPR045700 GO:0005096|GO:0043547
Lal22g0079 698 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 484 697 IPR045700 GO:0005096|GO:0043547
Lal22g0079 698 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 6 488 - -
Lal22g0079 698 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 484 697 - -
Lal22g0079 698 Pfam Rab3 GTPase-activating protein catalytic subunit 369 529 IPR026147 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0079 Lal-Chr22 489145 496329 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0079 K18270 - gmx:100818643 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0079 22 489145 496329 Lal22g0079 22 489145 496329 ECH
Lal18g1572 18 17352298 17362025 Lal22g0079 22 489145 496329 LSH
Lal3g0878 3 8409644 8421682 Lal22g0079 22 489145 496329 PCT
Lal18g1572 18 17352298 17362025 Lal22g0079 22 489145 496329 PCT
Lal22g0079 22 489145 496329 Lal3g0878 3 8409644 8421682 PCT
Lal22g0079 22 489145 496329 Lal18g1572 18 17352298 17362025 PCT