Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0584 ATGCCAATAACCTCCGACACCTCTTCCAAGCCCCCCAAAATATCTCTATCTAATAATAACCCCTCACTACCCTCTTTACGTACCTTATGCACCGGCGACATCTCCGCCGCATCGCCGCCACTGTGCTCCGCTTACGACCACTACCTCCGCCTCCCTGAGCTCATAAAGCTCTGGACTTATAGAGACTTTCCAAACTGGAACAACGAACCAGTTCTCAAACCCGCGTTGCAAGCTCTCGAAATCACGTTCCGGTTCATCTCAACCGTTTTCTCAGACCCCAGATCGTACGCGAACCGCAGAGAACTGAACCGTAGGGTCGAGTCACTCGCCACGTCACAGATCGAAATCATTGCTATGCTATGCGAGGATGAGGAACATTACGCAAAGACACGTGGCACTGCTCCAATCCTCGATCTCGCTGATCAAAGCTTGAGAAGAAGTTATAGTGAAACTAGCTTACTCCCTCGTCTCGCCACGTGGCAGAAAACAAAACACGCAGCGCAGAGGATCCTTCTCTCCATCGAATGCGCGATGATGAGGTGTCCTTACACGCTGGGATTAGGTGAACCGAATCTCGCAATGAAACCGAGTCTTCAATACGACGTCGTATGCAAGCCAAACGAGGTTCATCTTCACGCGCTGAAAACTAAAACCACAACCACACCGTCACAGGAGAGCCTCACTGTGCACGCGACGCACCAGATCGTGGAATGTTGGATCCAAGCGTCACGGAAGCTTCTAGAAAGAATAACCGATTCGTTAAATAAGAGAATGTTCGAGAAAGCCACAAGAGATTGTTACACGGTGGAACGAATCTGGAAGGTTCTAACGGAAATAGAAGACATTCACATGGTGATGGACCCGGACGATTTTCTTAAAATGAAAAAAGAATTAATCTCAATGAACGGTGAAACGGCGGCGTTTTGCTTCAGATCGAAGGGGTTAGTTGAAGTAACGAATATGTGTAGGGAATTGAAGCAGAATGTGCCGTGTATATTGGAAGTGGAAGTGGACCCCATGGGTGGGCCCGGAGTAATGGAAGCAGCGATGAAAGTGTATGTGGAGAAAGAAAGTGGGTTCGAGAAGGTTCATGTGTTGCAAGCGATGCAGGTTATTGAGGTGGCGATGAAGAGGTTTTATTATTGTTATAAACAGGTGTTGGTGGTGGTGATGGGTAGTGCTGTGGTGAGTGGGAACCGAGTTTGTGAAGGGGGTGACTCGTTGAGTCAGATATTTTTGGAACCTACTTATTTTCCGAGTTTGGATGCAGCTAAAACATTTCTTGGGTATTTTTGGGAAAATGATAATCGTGGTGACAATAGATGCATTCGGTTCTAG 1338 0.4753 MPITSDTSSKPPKISLSNNNPSLPSLRTLCTGDISAASPPLCSAYDHYLRLPELIKLWTYRDFPNWNNEPVLKPALQALEITFRFISTVFSDPRSYANRRELNRRVESLATSQIEIIAMLCEDEEHYAKTRGTAPILDLADQSLRRSYSETSLLPRLATWQKTKHAAQRILLSIECAMMRCPYTLGLGEPNLAMKPSLQYDVVCKPNEVHLHALKTKTTTTPSQESLTVHATHQIVECWIQASRKLLERITDSLNKRMFEKATRDCYTVERIWKVLTEIEDIHMVMDPDDFLKMKKELISMNGETAAFCFRSKGLVEVTNMCRELKQNVPCILEVEVDPMGGPGVMEAAMKVYVEKESGFEKVHVLQAMQVIEVAMKRFYYCYKQVLVVVMGSAVVSGNRVCEGGDSLSQIFLEPTYFPSLDAAKTFLGYFWENDNRGDNRCIRF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0584 445 MobiDBLite consensus disorder prediction 1 20 - -
Lal3g0584 445 Gene3D - 209 330 - -
Lal3g0584 445 Pfam Hs1pro-1 protein C-terminus 178 434 IPR009743 -
Lal3g0584 445 Pfam Hs1pro-1 N-terminus 4 175 IPR009869 GO:0006952
Lal3g0584 445 PANTHER NEMATODE RESISTANCE PROTEIN-LIKE HSPRO1 4 440 IPR038759 -
Lal3g0584 445 PANTHER NEMATODE RESISTANCE HSPRO2-LIKE PROTEIN 4 440 - -
Lal3g0584 445 SUPERFAMILY Indolic compounds 2,3-dioxygenase-like 211 428 IPR037217 GO:0019441|GO:0020037|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0584 Lal-Chr3 4415930 4417267 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0584 - - gmx:547603 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0584 3 4415930 4417267 Lal5g1131 5 14048229 14049584 LSH
Lal3g0584 3 4415930 4417267 Lal6g0247 6 1606182 1607519 PCT
Lal6g0247 6 1606182 1607519 Lal3g0584 3 4415930 4417267 PCT