Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0564 ATGGCTAAAGCTGTCGATGACGTGGCACCGTGCCTCCTCCGTAACAACAACGTTGTAAACGCCGATCCACTTGGCTTCCCGTCCGAGTTCCCGTACGAGTTGGGTATTTCCTCGCCGGTTGAGTCGGTGGCGGAGTCCACCGAAACTGAAATCAGCGACGATGAAGAAGACTTCTTTGTCGCTTTAACTCGCCGATTGAATCAGTCCTCGCTTCACCACTCTCGCAAACGTAACCCACTAACTTCACCAATCATCGCTAGTAACAAACCACAGAGTGTGAACATGAAGAATGGGGGTTTAGCCATATCGCCTCAATCAACGTTGAGTGGAATCGGAAACTGCTCCCGTGACGGAAGCCCAAACGGGTCTTCACGTGTTCCGTCACCGTCGACGACGCCGTTTTGTGAAAGCAATGACCCACGGGAAGCTATTTACGTTGCCGCGGTACAAGTAGCGAGGTTGAAGTATTTGAACGGTGAAACGTCGTCGTTTGGTTTTCACAACAGAAAGTTCCACAACCAGAAGAGTGAAGATCATGTTGTGAAGCAACAGTGTGGTTCTGTTTGGGGTAACCAGGTTCAGCAACAGAAACCGCTACAGATTCTGAATAAAGGGTATGAGAGTGTGAAATGCCCGCGCCGTTCTTCTATGCCTCAATCTTCATGGCCACCACTACAGATTCAGCCCCAGAATCAACAAGTACAATGTATCGGATCCGGGTTAAGACATGGTGGATCTTCTGTTACAAGAGGAAGTAGTGGTACTGGAGTGTTTTTACCTCGCCATCATGTGAAAAAACCTATGGAGCTTCCTCATAAGAAATCTGGTTTTGCTCCTGTTCTGGTACCAGCAAAGGTTGTTCATGCTCTTAATGTAACAAACCAATCACAGTTCTCAAATGCTTTTGCCATAGATTATGATGCATTGTTAGCAAGAAGAAACGCGTTTCTGATGCAGCATCTTGCTAGCTATGAAACTAGCCTCCCACAGGATTGGACCTACTGA 1005 0.4756 MAKAVDDVAPCLLRNNNVVNADPLGFPSEFPYELGISSPVESVAESTETEISDDEEDFFVALTRRLNQSSLHHSRKRNPLTSPIIASNKPQSVNMKNGGLAISPQSTLSGIGNCSRDGSPNGSSRVPSPSTTPFCESNDPREAIYVAAVQVARLKYLNGETSSFGFHNRKFHNQKSEDHVVKQQCGSVWGNQVQQQKPLQILNKGYESVKCPRRSSMPQSSWPPLQIQPQNQQVQCIGSGLRHGGSSVTRGSSGTGVFLPRHHVKKPMELPHKKSGFAPVLVPAKVVHALNVTNQSQFSNAFAIDYDALLARRNAFLMQHLASYETSLPQDWTY 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0564 334 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1-LIKE 22 334 - -
Lal3g0564 334 MobiDBLite consensus disorder prediction 70 137 - -
Lal3g0564 334 PANTHER TIP41-LIKE PROTEIN 22 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0564 Lal-Chr3 4272930 4274843 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0564 - - lang:109330255 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1629 9 18687618 18690785 Lal3g0564 3 4272930 4274843 ECH
Lal2g1880 2 21085911 21089074 Lal3g0564 3 4272930 4274843 ECH
Lal3g0564 3 4272930 4274843 Lal3g0564 3 4272930 4274843 ECH
Lal3g0564 3 4272930 4274843 Lal5g1148 5 14204788 14207076 LSH
Lal3g0564 3 4272930 4274843 Lal18g1347 18 15902430 15904377 LSH
Lal3g0564 3 4272930 4274843 Lal18g1347 18 15902430 15904377 PCT
Lal3g0564 3 4272930 4274843 Lal22g0251 22 1564673 1566963 PCT
Lal3g0564 3 4272930 4274843 Lal6g0260 6 1699229 1701120 PCT
Lal18g1347 18 15902430 15904377 Lal3g0564 3 4272930 4274843 PCT
Lal22g0251 22 1564673 1566963 Lal3g0564 3 4272930 4274843 PCT
Lal6g0260 6 1699229 1701120 Lal3g0564 3 4272930 4274843 PCT