Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0185 ATGATCCGAATTAGAAGCAGTGAAAAGGATAAAGTGATAACTGATAAGGCAATGGAGTTACATGATTTCAACGTGCTTATGGTGCTTGCAACTTTGGTTCTAGTTCCTAGCATTGAAGCTGTTTCAGCCATTGTTGATGTTTCGTACCTGAATCGGAGCAGTTTCCCTGATGGCTTCATTTTCGGAGCAGCTTCATCTGCATACCAGTATGAAGGTGCAGCAAGAGAAGGTGGTAGAGGACTAAGTATATGGGATACTTTCACCCATAAATACCCTCAAAAAATAAAAGATAGAAGCAATGGAGATGTAGCTGATGACTCATATCATAGGTATAAGGAAGATATTGGAATAATGAAGAATATGAATTTTGATGCTTATAGATTTTCCATTTCTTGGTCTAGAGTCCTACCAAAAGGAAAGCTTAGAGGAGGTGTAAACAAAGAAGGAATAAACTATTATAACAACCTTATTGACGAGCTAATAGCTAATGGTCTGCAACCATATGTGACTATCTTTCATTGGGACGTCCCCCAAGTCTTAGAGGACGAGTATGGTGGTTTTCTAAGCCCTCTTATAGTAGATGATTTTAAGGACTACGCTGAACTCTGCTTCAAGGAATTTGGTGATAGGGTGAGACATTGGATTACTTTGAATGAACCAAGAAGTGTGAGCAAGAATGGCTATGCAACTGGAAGGTTTGCACCCGGTCGGTGTTCAGAATGGCTCAAACTGAATTGCACAGGTGGTGATTCAGGGACAGAGCCATATTTGACTTCACACTACCAACTTCTTTCTCATGCTGCTGCTGCCAATTTGTATAAGACTAAGTATCAGGCATCTCAAAGGGGTTTAATAGGCATTACCTTAAATTCTGACTGGTACATATCCGTTTCTGAAGAGAAAGCAGACCATGATGCTGCACGGCGTGCCCTTGACTTCATGTTTGGATGGTATATGGAGCCACTCACGAAAGGTAAGTATCCGAAAAGTATGCGAACCATGGTGGGAAACCGGCTACCAAAGTTCTCTAAAGAAGAAGTCAAGCAACTTAAGGGGTCGTTTGATTTTCTGGGTCTAAACTACTACTCATCATTTTATGCTGCCTATGCACCTCATCTACGTGGTGCCAGACCAACCTTACAAACTGATGCTCTTGTTAATGTTACAAATCAGCATGACGGCAAGCCCCTTGGTCCAATGGCTGCTTCAACTTGGTTATGTATTTATCCAAAAGGATTTCTGGAGCTATTGCTCTTCATCAAGAAGAAGTACAACAACCCTGTAATTTACATTACTGAAAATGGTTATGATGAGTACAATGATCCAACACTGTCACTTGAAGAAGCCCTTATAGATACTTATAGAGTTGATTACTTCTATCGTCATCTTTATTATCTTCAAATTGCGATCAGGTATGGTGTGAATGTAAAGGGATATTTTGCATGGTCATTGTTGGATAACATGGAATGGGATTCTGGGTATACAGTGCGATTTGGACTCATCTTTGTGGACTTTAAAGATGGGTTGAAGAGATACCTGAAACTCTCGGCTCATTGGTTCAAGAATTTTCTCAATAAGTCTTAG 1584 0.4028 MIRIRSSEKDKVITDKAMELHDFNVLMVLATLVLVPSIEAVSAIVDVSYLNRSSFPDGFIFGAASSAYQYEGAAREGGRGLSIWDTFTHKYPQKIKDRSNGDVADDSYHRYKEDIGIMKNMNFDAYRFSISWSRVLPKGKLRGGVNKEGINYYNNLIDELIANGLQPYVTIFHWDVPQVLEDEYGGFLSPLIVDDFKDYAELCFKEFGDRVRHWITLNEPRSVSKNGYATGRFAPGRCSEWLKLNCTGGDSGTEPYLTSHYQLLSHAAAANLYKTKYQASQRGLIGITLNSDWYISVSEEKADHDAARRALDFMFGWYMEPLTKGKYPKSMRTMVGNRLPKFSKEEVKQLKGSFDFLGLNYYSSFYAAYAPHLRGARPTLQTDALVNVTNQHDGKPLGPMAASTWLCIYPKGFLELLLFIKKKYNNPVIYITENGYDEYNDPTLSLEEALIDTYRVDYFYRHLYYLQIAIRYGVNVKGYFAWSLLDNMEWDSGYTVRFGLIFVDFKDGLKRYLKLSAHWFKNFLNKS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0185 527 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 59 73 IPR033132 -
Lal2g0185 527 Gene3D Glycosidases 39 526 - -
Lal2g0185 527 PANTHER GLYCOSYL HYDROLASE 43 526 IPR001360 GO:0004553|GO:0005975
Lal2g0185 527 Pfam Glycosyl hydrolase family 1 53 526 IPR001360 GO:0004553|GO:0005975
Lal2g0185 527 SUPERFAMILY (Trans)glycosidases 44 525 IPR017853 -
Lal2g0185 527 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 43 526 - -
Lal2g0185 527 PRINTS Glycosyl hydrolase family 1 signature 353 367 IPR001360 GO:0004553|GO:0005975
Lal2g0185 527 PRINTS Glycosyl hydrolase family 1 signature 429 437 IPR001360 GO:0004553|GO:0005975
Lal2g0185 527 PRINTS Glycosyl hydrolase family 1 signature 452 463 IPR001360 GO:0004553|GO:0005975
Lal2g0185 527 PRINTS Glycosyl hydrolase family 1 signature 473 490 IPR001360 GO:0004553|GO:0005975
Lal2g0185 527 PRINTS Glycosyl hydrolase family 1 signature 497 509 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0185 Lal-Chr2 1091298 1098494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0185 28 526 Glycoside Hydrolase AT5G44640 53.892 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0185 - K01188 gmx:100801874 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0185 2 1091298 1098494 Lal2g0185 2 1091298 1098494 ECH
Lal2g0185 2 1091298 1098494 Lal9g0188 9 1181404 1184559 ECH
Lal25g0379 25 2540086 2546450 Lal2g0185 2 1091298 1098494 PCT