Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0379 ATGGCGTTTAAAGTGTTTCTAAAACTTGTTGGCCTATTTGCTCTTGTTACAACCACATCAGTTACTTTTGCAGAAGAAGTTGTTGCACCCATTCTTCACGTTGCATCACTGAATAGAAGCACCTTTCCCAAAGGTTTTGTTTTTGGGACAGCATCTGCAGCATACCAGTATGAAGGAGCAGCAAAAGAAGGTGGTAGAGAACCAAGTATATGGGATATATTCACTCATAAATATCCAGAAAAGATACAAGATAGAAGCAATGGAGATGTCGCAAATGATGAATATCACCACTATAAGGAAGATGTTGGGATCATGAAGCATATGAATTTGGATGCTTATAGATTCTCCATTTCTTGGTCTAGGATACTCCCAAATGGAAAAGTAAGTGGAGGTATAAACAAAGAAGGGGTCAAATATTACAACAATCTCATTAACGAGCTACTAGCTAATGATATAAAACCATTTGTGACCCTTTTTCATTGGGATCTTCCTCAAGCCTTGGAAAATGAGTATGGTGGCTTCCTAAGCCCAAACATTGTAAAACATTTTGAAGATTATGCAGCAGTTTGCTTCAAAGAATTTGGAGATAGGGTGAAACATTGGATTACTTTGAATGAACCATGGTCATATAGTAATGGTGGTTATGCAATAGGACAATTTGCACCAGGTAGATGTTCTAAATGGGTAAACCCAAACTGCACTGGTGGTGATTCAGGGACAGAACCCTATGTGGTTTCACATCATCAACTTCTTGCTCATGCTGCAGCTGTTCAAGTATACAAGAACAAGTATCAGAAATCTCAAAAAGGTGTAATTGGCATAACCTTGGTGTCTCACTGGTTTGTGCCACTTTCAAATAGCAAGTTAGATAAAGAAGCTGCCACAAGAGCAGTTGATTTCATGTTTGGATGGTTTATGGGACCATTGACAACAGGAGATTATCCAAAAAGCATGCACTCATTAGTGGGAAAACGATTGCCAAAGTTTAATACATTGCAAGCTAAACTTATCAATGGTTCATTTGATTTTCTTGGACTAAATTACTACACAACTAACTATGCTTCCAATGCACCTCACCTCAGCAATGGCATGCATAATTATGTTACAGATTCTCTTGCTAATCTTACAACTGAGCGCAATGGGATTCCCATAGGTCCAAGGGCAGCTTCACAATGGTTATATGTTTATCCTAAAGGAATTGAAGAACTATTACTCTACATTAAAAAGAAGTATAACAACCCTTTGATTTACATCACTGAAAATGGTGTTGATGAGTTTAGTGATCCAACATTATCACTCAAGGAAGCTCTTGTAGATACTTTTAGAATTGAGTATTATTATCGTCATCTCTATTATCTTGGATCAGCAATTAGAAATGGTGTAAATGTGAAAGGATATTTTGCATGGTCATTGTTGGATAATTTTGAATGGGCTTCAGGCTATACAGTGCGATTTGGAATAAACTTTGTAGATTATAAAAATGGTAAGCGATACCAAAAGTCTTCAGCAGAATGGTTCAAGAATTTCCTCAAAAGATATTAA 1542 0.369 MAFKVFLKLVGLFALVTTTSVTFAEEVVAPILHVASLNRSTFPKGFVFGTASAAYQYEGAAKEGGREPSIWDIFTHKYPEKIQDRSNGDVANDEYHHYKEDVGIMKHMNLDAYRFSISWSRILPNGKVSGGINKEGVKYYNNLINELLANDIKPFVTLFHWDLPQALENEYGGFLSPNIVKHFEDYAAVCFKEFGDRVKHWITLNEPWSYSNGGYAIGQFAPGRCSKWVNPNCTGGDSGTEPYVVSHHQLLAHAAAVQVYKNKYQKSQKGVIGITLVSHWFVPLSNSKLDKEAATRAVDFMFGWFMGPLTTGDYPKSMHSLVGKRLPKFNTLQAKLINGSFDFLGLNYYTTNYASNAPHLSNGMHNYVTDSLANLTTERNGIPIGPRAASQWLYVYPKGIEELLLYIKKKYNNPLIYITENGVDEFSDPTLSLKEALVDTFRIEYYYRHLYYLGSAIRNGVNVKGYFAWSLLDNFEWASGYTVRFGINFVDYKNGKRYQKSSAEWFKNFLKRY 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0379 513 Pfam Glycosyl hydrolase family 1 39 511 IPR001360 GO:0004553|GO:0005975
Lal25g0379 513 Gene3D Glycosidases 23 512 - -
Lal25g0379 513 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 46 60 IPR033132 -
Lal25g0379 513 PANTHER GLYCOSYL HYDROLASE 9 512 IPR001360 GO:0004553|GO:0005975
Lal25g0379 513 PRINTS Glycosyl hydrolase family 1 signature 340 354 IPR001360 GO:0004553|GO:0005975
Lal25g0379 513 PRINTS Glycosyl hydrolase family 1 signature 416 424 IPR001360 GO:0004553|GO:0005975
Lal25g0379 513 PRINTS Glycosyl hydrolase family 1 signature 439 450 IPR001360 GO:0004553|GO:0005975
Lal25g0379 513 PRINTS Glycosyl hydrolase family 1 signature 460 477 IPR001360 GO:0004553|GO:0005975
Lal25g0379 513 PRINTS Glycosyl hydrolase family 1 signature 484 496 IPR001360 GO:0004553|GO:0005975
Lal25g0379 513 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 9 512 - -
Lal25g0379 513 SUPERFAMILY (Trans)glycosidases 29 511 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0379 Lal-Chr25 2540086 2546450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0379 13 510 Glycoside Hydrolase AT5G44640 55.090 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0379 - K01188 gmx:100812431 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0379 25 2540086 2546450 Lal25g0379 25 2540086 2546450 ECH
Lal1g0290 1 1722957 1727176 Lal25g0379 25 2540086 2546450 ECH
Lal25g0379 25 2540086 2546450 Lal2g0185 2 1091298 1098494 PCT