Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0178 ATGGACCCTAGTGAATTGAAGCGTGTGTTCCAAATGTTTGACCGTGATGGTGATGGAAGGATAAGCAAGAAGGAGCTGAAGGATTCAATGGAGAAGCTAGGAATGTTGATACCCGATAAGGAGTTAACACAAATGATAGAGAAAATAGATGTGAATGGTGATGGTTGGGTTGATATGGAAGAGTTTGGAGAGTTATATGAGTCGATCATGGAAGAGCGCGATGAAGAAGAAGATATGAGGGAAGCATTCAATGTGTTTGATCACAACCGTGATGGTTTCATCACGGTCGAGGAACTAAGGACCGTTTTGTCATCTCTAGGACTCAAGCAAGGAAGAACGGTCGAAGAATGCAAGAAAATGATAATGAAGGTGGATGTTGATGGAGATGGAATGGTTAATTACAAGGAGTTCAAGCAAATGATGAAGGGTGGAGGCTTTAGTGCTCTTGGATAA 453 0.4194 MDPSELKRVFQMFDRDGDGRISKKELKDSMEKLGMLIPDKELTQMIEKIDVNGDGWVDMEEFGELYESIMEERDEEEDMREAFNVFDHNRDGFITVEELRTVLSSLGLKQGRTVEECKKMIMKVDVDGDGMVNYKEFKQMMKGGGFSALG 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0178 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Lal2g0178 150 Gene3D - 2 66 - -
Lal2g0178 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Lal2g0178 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Lal2g0178 150 SMART efh_1 116 144 IPR002048 GO:0005509
Lal2g0178 150 SMART efh_1 5 33 IPR002048 GO:0005509
Lal2g0178 150 SMART efh_1 41 69 IPR002048 GO:0005509
Lal2g0178 150 SMART efh_1 78 106 IPR002048 GO:0005509
Lal2g0178 150 PANTHER CALMODULIN-LIKE PROTEIN 3 1 149 - -
Lal2g0178 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Lal2g0178 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 149 - -
Lal2g0178 150 SUPERFAMILY EF-hand 4 144 IPR011992 -
Lal2g0178 150 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Lal2g0178 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Lal2g0178 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Lal2g0178 150 Gene3D - 67 144 - -
Lal2g0178 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Lal2g0178 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Lal2g0178 150 PRINTS Parvalbumin signature 65 83 - -
Lal2g0178 150 PRINTS Parvalbumin signature 87 103 - -
Lal2g0178 150 PRINTS Parvalbumin signature 124 137 - -
Lal2g0178 150 CDD EFh 82 142 IPR002048 GO:0005509
Lal2g0178 150 CDD EFh 5 62 IPR002048 GO:0005509
Lal2g0178 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0178 Lal-Chr2 1055967 1056419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0178 1 150 EF-hand Containing Proteins AT3G07490 80.000 2.36e-78 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0178 K13448 - csv:101210877 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0375 25 2500846 2501298 Lal2g0178 2 1055967 1056419 PCT
Lal10g1067 10 17670712 17671164 Lal2g0178 2 1055967 1056419 PCT