Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0375 ATGGACCCTAGTGAACTCAAACGAATTTTCCAGCTGTTTGATCGTAACGGTGATGGACGAATTACGATGAAGGAGCTAAATGATTCGCTAGAGAAGTTAAACATCTTCATACCTGATAACGAGTTAGCAAAAATGATCGAGAAGATTGATGTTAACCATGATGGGTGTGTGGACATCGATGAATTCGGTGAGTTGTACAAATCCATCATGGATGATCGTGATGAAGAGGAGGATATGAGGGAGGCATTCAACGTGTTCGACCAAAACGGTGATGGGTTCATATCCGTGGAAGAGTTGCGATCAGTTTTGTCGTCGCTAGGGTTGAAACAAGGAAGAACAGTCGAGGATTGCAAGAAGATGATCATGAAGGTTGATGTTGATGGAGATGGAATGGTGGATTATAAAGAGTTCAAGCAAATGATGAAAGGTGGTGGCTTTAGTGCTCTAAGCTAA 453 0.4216 MDPSELKRIFQLFDRNGDGRITMKELNDSLEKLNIFIPDNELAKMIEKIDVNHDGCVDIDEFGELYKSIMDDRDEEEDMREAFNVFDQNGDGFISVEELRSVLSSLGLKQGRTVEDCKKMIMKVDVDGDGMVDYKEFKQMMKGGGFSALS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0375 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Lal25g0375 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Lal25g0375 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 150 - -
Lal25g0375 150 SUPERFAMILY EF-hand 4 144 IPR011992 -
Lal25g0375 150 Gene3D - 69 144 - -
Lal25g0375 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Lal25g0375 150 Pfam EF-hand domain pair 5 67 IPR002048 GO:0005509
Lal25g0375 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Lal25g0375 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Lal25g0375 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Lal25g0375 150 Gene3D - 2 68 - -
Lal25g0375 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Lal25g0375 150 SMART efh_1 116 144 IPR002048 GO:0005509
Lal25g0375 150 SMART efh_1 5 33 IPR002048 GO:0005509
Lal25g0375 150 SMART efh_1 78 106 IPR002048 GO:0005509
Lal25g0375 150 SMART efh_1 41 69 IPR002048 GO:0005509
Lal25g0375 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Lal25g0375 150 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 150 - -
Lal25g0375 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0375 Lal-Chr25 2500846 2501298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0375 1 149 EF-hand Containing Proteins AT1G05990 76.000 7.60e-77 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0375 K13448 - zju:107422102 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0375 25 2500846 2501298 Lal10g1067 10 17670712 17671164 LSH
Lal25g0375 25 2500846 2501298 Lal2g0178 2 1055967 1056419 PCT