Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1067 ATGGACCCTAATGAACTTAAGCGAATATTCCAGCTCTTTGATCGTAATGGTGATGGCCGAATCACAAAGAAGGAGCTAAATGATTCCCTTGAGAACTTAAGCATCTTCATCCCGGACAACGAGTTAACAAAAATGATTGAGAAGATTGATGTTAATGGCGATGGTTGCATGGACATGGATGAATTTGGTGAGTTGTATCAATCCATTATGGAAGATCGTGATGAAGAGGAGGATATGAGGGAGGCATTCAATGTGTTCGATCAAAACGGTGATGGGTTCATCACAGTTGAAGAGTTAAGATCGGTTTTTGCATCTCTAGGGTTGAAACAAGGAAGAACTGTCGAGGATTGTAAGAAGATGATAATGAAGGTTGATGTTGATGGAGATGGAATGGTGAATTATAATGAGTTCAAGAAAATGATGAAAGGTGGTGGCTTCAGTGCTCTAACTTAA 453 0.3974 MDPNELKRIFQLFDRNGDGRITKKELNDSLENLSIFIPDNELTKMIEKIDVNGDGCMDMDEFGELYQSIMEDRDEEEDMREAFNVFDQNGDGFITVEELRSVFASLGLKQGRTVEDCKKMIMKVDVDGDGMVNYNEFKKMMKGGGFSALT 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1067 150 Gene3D - 68 144 - -
Lal10g1067 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Lal10g1067 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Lal10g1067 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 149 - -
Lal10g1067 150 CDD EFh 78 142 IPR002048 GO:0005509
Lal10g1067 150 SMART efh_1 5 33 IPR002048 GO:0005509
Lal10g1067 150 SMART efh_1 78 106 IPR002048 GO:0005509
Lal10g1067 150 SMART efh_1 116 144 IPR002048 GO:0005509
Lal10g1067 150 SMART efh_1 41 69 IPR002048 GO:0005509
Lal10g1067 150 Gene3D - 3 67 - -
Lal10g1067 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Lal10g1067 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Lal10g1067 150 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 149 - -
Lal10g1067 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Lal10g1067 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Lal10g1067 150 SUPERFAMILY EF-hand 4 144 IPR011992 -
Lal10g1067 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Lal10g1067 150 Pfam EF-hand domain pair 5 67 IPR002048 GO:0005509
Lal10g1067 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Lal10g1067 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1067 Lal-Chr10 17670712 17671164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1067 1 148 EF-hand Containing Proteins AT2G43290 71.242 3.97e-77 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1067 K13448 - zju:107422102 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0375 25 2500846 2501298 Lal10g1067 10 17670712 17671164 LSH
Lal10g1067 10 17670712 17671164 Lal2g0178 2 1055967 1056419 PCT