Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0456 ATGGCATTGACTATTAGCAATGCTAAAGTATCAGAATTTTCTTTCCTCAATTCAAATTCATCATCATTATCACTCTCCAATTTTCCTCGTTCCTCCACTCTCTTTCTCTCTCACTCCAATTTTCAAATCCCCACTCTCATTTTCTCTTCTCTCCGAAGTACCCAACACAAAAATACCCCTAACTCTAACCCTAACCCTACCCATAACCATTCCTCATCAAAACCCAACATTTCAGCACCATGGCTCCCCAAAACCCCCTCTTCCGACGATTCCTCCAAAAGGGTCTCCGATTCCACCACAAAAGACTCATTTTCCAATGCACCCGATAAAGGGCACTTTCAGAGTAGTGATAAAGGACAGAACGCGGTTGAGAGAATTGTTCTCCGGTTAAGGAATTTGGGGTTAACTCCAGATGATGAAAAAGAAGCAGAAGCTGAAGGTGAAGGTGAAACACAAGAAACAAAAGCTAATGTTAATGATGCTGTTCCGGTAACCGGAGAGGAGAGGTTGGGTGAGTTGTTGAAGAGAGAGTGGATTAGGCCAGATTATATGTTGTTGTCGGATGAGGATAAGGTGAATGGTGAACTGGTTTTGCCATGGGAGAGAGAAGAATACGAGGTAGTGGATAAGAAGGAGAAGGAGAAGGGTGAGGAGGGAGAGAACGGGTTTCAGAAAAGAAGAGCAAAGGCACCATCTTTGGCTGAATTAACACTTGAAGATGAGTTGTTGAGGAGGTTGAGGAGAGAGGGGATGACAATTAGAGAGAGGATTAATGTGCCTAAAGCTGGGCTCACACAAGATGTTATGGATAAGATTCACAAAACATGGAGGAGGGAGGAGTTGGTGAGGCTCAAGTTTCACGAGGAACTTGCTAGGGATATGAGGATTGCTCATAAGATTGTTGAGCTGACTTGTTGTAGTGTGCAGCGCCGAACAGGAGGATTAGTTACATGGAGCTCAGGAAGTGTTATGATGGTTTATCGTGGTATAAATTATCAAGGGCCTGCATCTGAGAGCCAACTCAATGAAAGGGAAGGTGATGGTTTTTTCGTACCAGATGTCTCGTCAGGAAGTTTGTCAAGAACAAAAGACAGTAATGAAACGTCAACCCTGGAGAAGACTGAGCCAGTTGTGAAGGATCAAGAAAAGTCAGAGAACATGACAGAGGAGGAAGCAGAGTACAATGCACTACTTGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGTACAGGAATACTTCCTGTTGATGCCGATAAACTCCCCCCTACAGTTCCTGGTTACAAAACACCTTTTAGGCTACTTCCTGCTCGAATGCGTTCTAACCTAACAAATGCAGAGATGACCAATTTAAGGAACCTTGCCAGATCACTTCCTTGTCATTTTGCCTTAGGGAGAAATAGACATCACCAAGGTCTGGCATGTTCTATTCTTAAGCTCTGGGATAAAAGTTTACTTGCAAAGATTGCTATCAAACGTGGTATCCAGAACACAAACAATAAACTAATGTCTGAGGAGCTCAAGACGTTAACAGGAGGTACCTTGCTGTCAAGGAATAAATATTTCATTGTTATATATCGTGGGAAGGACTTCGTTCCAACAACTGTGGCATCAGTTTTGGCAGAAAGAGAGGAATTGACAAAACAGGTACAGGATGTTGAAGAGGAGGTGCGGTTCAGAGCTGTTGACGCAACTCCGTCCGGGCAAGATGAAGCAAAACCACAGGCAGGATCTTTAGCGGAGTTCTATGAGGCTCAAGCACGCTGGGGAAGGGATATATCTGCTGAAGAACGTGAGAAGATGTTGGAAGAAGCTGCCAAAGCCAAAAGTCTTAAGATTGTCAGACAAATTGAACATAAACTAGCTCTTGCCCAGGGCAAAAAGCATAGAGCTGAAAAACTGATGGCTAAAATAGAAGCATCCATGGTTCCAGCTAGCCCTGATTATGACCAGGAAACAATCACAGATGAAGAACGTGCTATGTTCCGCAGGGTTGGTTTAAGAATGAAGCCATACTTACCACTTGGTATCCGTGGTGTGTTCGATGGTGTCATTGAGAATATGCATCTGCATTGGAAATACAGAGAGCTTGTAAAATTGATAACAAAGCAAAAGACTCTTGCTTTTGTTGAAGACACGGCAAGGTTACTTGAATATGAGAGTGGTGGAATACTAGTGGCAATAGAGAGAGTTCCCAAAGGATTTGCTCTTATTTTCTATCGTGGGAAGAATTATAGGCGGCCCATTACTATAAGGCCTAGAAACCTTTTAACGAAGGCAAAGGCATTGAAGCATTCAATTGCGATGCAAAGACACGAGGCTCTGAGTCAACATATTACTGAATTGGAGAAAACAATATATCAAATGAAAAAAGAACTTGGTATGCCTCAAGATTTGGAGCTTGAAGAAAGGTGGAGCATAGAGGACCGTAATCAATCAGACAACTTCTCAGAATTCACTGAAAGTGAGGATGAAGATTCTGATGGTTTTGAAGATATGGAAGACAGCGATTGGGAAGATGATGAGGACTAG 2532 0.4293 MALTISNAKVSEFSFLNSNSSSLSLSNFPRSSTLFLSHSNFQIPTLIFSSLRSTQHKNTPNSNPNPTHNHSSSKPNISAPWLPKTPSSDDSSKRVSDSTTKDSFSNAPDKGHFQSSDKGQNAVERIVLRLRNLGLTPDDEKEAEAEGEGETQETKANVNDAVPVTGEERLGELLKREWIRPDYMLLSDEDKVNGELVLPWEREEYEVVDKKEKEKGEEGENGFQKRRAKAPSLAELTLEDELLRRLRREGMTIRERINVPKAGLTQDVMDKIHKTWRREELVRLKFHEELARDMRIAHKIVELTCCSVQRRTGGLVTWSSGSVMMVYRGINYQGPASESQLNEREGDGFFVPDVSSGSLSRTKDSNETSTLEKTEPVVKDQEKSENMTEEEAEYNALLDGLGPRFVEWWGTGILPVDADKLPPTVPGYKTPFRLLPARMRSNLTNAEMTNLRNLARSLPCHFALGRNRHHQGLACSILKLWDKSLLAKIAIKRGIQNTNNKLMSEELKTLTGGTLLSRNKYFIVIYRGKDFVPTTVASVLAEREELTKQVQDVEEEVRFRAVDATPSGQDEAKPQAGSLAEFYEAQARWGRDISAEEREKMLEEAAKAKSLKIVRQIEHKLALAQGKKHRAEKLMAKIEASMVPASPDYDQETITDEERAMFRRVGLRMKPYLPLGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTARLLEYESGGILVAIERVPKGFALIFYRGKNYRRPITIRPRNLLTKAKALKHSIAMQRHEALSQHITELEKTIYQMKKELGMPQDLELEERWSIEDRNQSDNFSEFTESEDEDSDGFEDMEDSDWEDDED 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0456 843 MobiDBLite consensus disorder prediction 803 843 - -
Lal25g0456 843 MobiDBLite consensus disorder prediction 98 120 - -
Lal25g0456 843 Coils Coil 536 556 - -
Lal25g0456 843 SUPERFAMILY YhbY-like 442 536 IPR035920 -
Lal25g0456 843 MobiDBLite consensus disorder prediction 134 154 - -
Lal25g0456 843 Coils Coil 772 792 - -
Lal25g0456 843 MobiDBLite consensus disorder prediction 366 390 - -
Lal25g0456 843 MobiDBLite consensus disorder prediction 338 391 - -
Lal25g0456 843 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 6 843 IPR045278 GO:0000375|GO:0003729
Lal25g0456 843 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 6 843 - -
Lal25g0456 843 MobiDBLite consensus disorder prediction 818 843 - -
Lal25g0456 843 MobiDBLite consensus disorder prediction 54 89 - -
Lal25g0456 843 Pfam CRS1 / YhbY (CRM) domain 239 328 IPR001890 GO:0003723
Lal25g0456 843 Pfam CRS1 / YhbY (CRM) domain 443 527 IPR001890 GO:0003723
Lal25g0456 843 Pfam CRS1 / YhbY (CRM) domain 655 741 IPR001890 GO:0003723
Lal25g0456 843 ProSiteProfiles CRM domain profile. 652 752 IPR001890 GO:0003723
Lal25g0456 843 ProSiteProfiles CRM domain profile. 441 538 IPR001890 GO:0003723
Lal25g0456 843 ProSiteProfiles CRM domain profile. 236 339 IPR001890 GO:0003723
Lal25g0456 843 SUPERFAMILY YhbY-like 653 751 IPR035920 -
Lal25g0456 843 SMART CRS1_YhbY_2 443 527 IPR001890 GO:0003723
Lal25g0456 843 SMART CRS1_YhbY_2 238 328 IPR001890 GO:0003723
Lal25g0456 843 SMART CRS1_YhbY_2 654 741 IPR001890 GO:0003723
Lal25g0456 843 MobiDBLite consensus disorder prediction 803 817 - -
Lal25g0456 843 MobiDBLite consensus disorder prediction 54 120 - -
Lal25g0456 843 SUPERFAMILY YhbY-like 237 335 IPR035920 -
Lal25g0456 843 Gene3D - 441 535 IPR035920 -
Lal25g0456 843 Gene3D - 653 752 IPR035920 -
Lal25g0456 843 Gene3D - 236 342 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0456 Lal-Chr25 3132156 3138290 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0456 - - lang:109347730 1351.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0456 25 3132156 3138290 Lal25g0456 25 3132156 3138290 ECH
Lal8g0430 8 2883302 2896530 Lal25g0456 25 3132156 3138290 LSH
Lal16g1013 16 6732654 6739995 Lal25g0456 25 3132156 3138290 PCT
Lal25g0456 25 3132156 3138290 Lal16g1013 16 6732654 6739995 PCT