Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1013 ATGGGTTTAAGCAGCACCACTGCTAAACTTTCTGAACTCCCTTTCAGGACATCACTTTCACCATTCACTACTCTCAACTTTATCTTCTCTTCTTCTTACTCTCACTTTTCTCATTCCAATTTCAACAAATCCCCACTTCAATTTCTCAACTCTTATTCGTCTTCTTCTTCCTCTTCACTTCCAACAATACATCGAAACTATTCATCAAACACCTTATCTTCACCTTGGCTCACTAAATGGCCCTCCAACCCTAACCCACCACCCTACCGGAAAACGCTTTCCGATTCCAACCCCGACGGCGGCGACGACGACCTTTTCGGCCCAATCGTTGTCACTCGCTATTCCCCCAACAACGATGACGATAAACCCAGCAACGCAATTGACAGAGTCGTTCTTCGCCTTCGCAATCTAGGGTTACAAGACGAAGAGCAACAACAGTATGAGGTGAATGAAGTAAGTGGCGATTTGTTAGGACGAGAATGGATTCGGCCTGATACTAGTTTCCGTGAGGATAATGGTGATATGGTTTTGCCATGGGAGAAAGAGGAAGTGGAAGAGGAGAAGGAGGAAATAGAGGGAGAGAAAAAGGGGTTAAGGAAGAGAAGGGTAAAGGCGAAAACTTTGGCGGAGTTAACTCTTGATGAAGAGGAAATGAGGCGATTGCGAATAATTGGAATGCAGCTTAGAGATAAAGTTAATGTGCCAAAGGCTGGGCTCACTCAGGTTGTGTTGGATAAGATTCATGATGTGTGGAGAAAGAGTGAGATGGTGAGACTCAAGTTTCATGAGGTTCTTGCAAAGGATATGAAGGCTGCTCATCAAATTGTTGAGCTTCGAACAAGAGGATTAGTTATATGGAGGGCAGGAAGTCTTATGTTGGTGTACCGTGGTAGGAATTATGAGCGGCCAACATCCGGAAGCCAACTGAATAAAAGTTTGTTAAGAACAGAAGGCGATAATGCAACCTCGTCCCTGGAAGAGAATGTATCAGTTGTGAAGAATCAAGGACAGCCTGAGATAATGACACCAGAGGAAGTAGATTTCAACAGACTGCTTGATGGTTTAGGACCTCGTTTTGTTGAATGGTGGGGTACAGGAATACTTCCGGTTGATGCTGATTTACTTCCTCCTATAGTTCCTGGTTACAAAACACCTCTTAGGCTTCTTCCTGCTGGAATGCGTCCACGACTAACTGATGCACAGCTGACAAATATGCGCAAAATTTCCAAACCTCTTCCTTGTCATTTTGCCTTAGGGAGAAATAGAAATCATCAAGGTCTGGCATCTGCTATTCTTAAGCTTTGGGAGACAAGCTTAGTTGCAAAGATTGCTATCAAGCGTGGTATCCAGAATACAAACAGCGAACTAATGGCTGAGGAACTGAAGAAACTTATAGGAGGTACCTTGCTGATAAGGAATAAATATTACATTGTAATATATCGCGGGAATGACTTTGTTCCAACCTGTGTGGCTGCTGTTTTAGCTGAAAGACAGAAATTGACAAAACAAGTGCAGGAGGTTGAGGACACGGTGCGGTCTGGAGCTGTTGATGTAATGCCATCAGAGGAAGGTGAAACAACAGCACAAGCAGGAACACTAACTGAGTTCTATGAGGCTCAGGTACGCTGGGGAAGGGATGTATCTACTGAAGAACATGAGAAGATGATGAAAGAGGCAGCCGAAGTCAAGAATGTTAAGCTTTTCAAAAAGATTGAACGCAAACTAGCTCTTGCTCAGGTCAAAAGGCTTAGAGCAGAAGAGCTGTTACGTAAAGTTGAAGCATCCCTGGTTCCAGCTGGTCCTGATTATGACCAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGCAGGGTTGGTTTGAGTATGAAGGCATACTTGGAACTTGGTACACGTGGTGTTTTTGATGGTGTCATTGAGAATATGCATTTGCATTGGAGGCACCGAGAACTTGTTAAATTAATAACAAAACAAAAGACCCTCACTTTTGTTGAAGACACGGCTAGGCTACTGGGATATGAGAGTGGTGGAATATTAGTCTCAATAGATAGAGTTCCCAAAGGATTTACTCTTATTTACTACCGTGGAAAGAATTATAGGCGACCCATTACTCTGAGGCCTAGAAACCTTCTAACAAAGGCAAAAGCATTGAAGCGTGCTATAGCCATGCAACGCCATGAGGCTCTGAGTCAGCATATAACTGAATTGGGGAAAAAAATAGAAGAAATGAGAAAAGGACTTGCTTTGTCTCAAGATTTGAAACCTGGAGATAGGTGCAGCATAGAAGACCATAACCATATACACGGCATATCAGAATTTGCCCAATGCCTAAATCCTAGTATGGAGTATGAAACTGTAACACTTAACTTTTTATCATCTGAAAGAAGAGTGAGGATGAAGGCAGTGATTACGATGACAGTGATGGCAGTTTTGATTATAAAGAGGACAGTGGTCGGGATGATGAAGATTTTGATTGTCGAAACAGAAAATGATGGGTATCCTGTGAAGGCAGGTTGA 2517 0.4295 MGLSSTTAKLSELPFRTSLSPFTTLNFIFSSSYSHFSHSNFNKSPLQFLNSYSSSSSSSLPTIHRNYSSNTLSSPWLTKWPSNPNPPPYRKTLSDSNPDGGDDDLFGPIVVTRYSPNNDDDKPSNAIDRVVLRLRNLGLQDEEQQQYEVNEVSGDLLGREWIRPDTSFREDNGDMVLPWEKEEVEEEKEEIEGEKKGLRKRRVKAKTLAELTLDEEEMRRLRIIGMQLRDKVNVPKAGLTQVVLDKIHDVWRKSEMVRLKFHEVLAKDMKAAHQIVELRTRGLVIWRAGSLMLVYRGRNYERPTSGSQLNKSLLRTEGDNATSSLEENVSVVKNQGQPEIMTPEEVDFNRLLDGLGPRFVEWWGTGILPVDADLLPPIVPGYKTPLRLLPAGMRPRLTDAQLTNMRKISKPLPCHFALGRNRNHQGLASAILKLWETSLVAKIAIKRGIQNTNSELMAEELKKLIGGTLLIRNKYYIVIYRGNDFVPTCVAAVLAERQKLTKQVQEVEDTVRSGAVDVMPSEEGETTAQAGTLTEFYEAQVRWGRDVSTEEHEKMMKEAAEVKNVKLFKKIERKLALAQVKRLRAEELLRKVEASLVPAGPDYDQETITDEERVMFRRVGLSMKAYLELGTRGVFDGVIENMHLHWRHRELVKLITKQKTLTFVEDTARLLGYESGGILVSIDRVPKGFTLIYYRGKNYRRPITLRPRNLLTKAKALKRAIAMQRHEALSQHITELGKKIEEMRKGLALSQDLKPGDRCSIEDHNHIHGISEFAQCLNPSMEYETVTLNFLSSERRVRMKAVITMTVMAVLIIKRTVVGMMKILIVETENDGYPVKAG 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1013 838 ProSiteProfiles CRM domain profile. 606 706 IPR001890 GO:0003723
Lal16g1013 838 SMART CRS1_YhbY_2 608 695 IPR001890 GO:0003723
Lal16g1013 838 SMART CRS1_YhbY_2 213 296 IPR001890 GO:0003723
Lal16g1013 838 SMART CRS1_YhbY_2 397 481 IPR001890 GO:0003723
Lal16g1013 838 Gene3D - 211 308 IPR035920 -
Lal16g1013 838 Gene3D - 396 487 IPR035920 -
Lal16g1013 838 Gene3D - 607 707 IPR035920 -
Lal16g1013 838 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 6 775 IPR045278 GO:0000375|GO:0003729
Lal16g1013 838 ProSiteProfiles CRM domain profile. 211 307 IPR001890 GO:0003723
Lal16g1013 838 SUPERFAMILY YhbY-like 212 303 IPR035920 -
Lal16g1013 838 Pfam CRS1 / YhbY (CRM) domain 609 695 IPR001890 GO:0003723
Lal16g1013 838 Pfam CRS1 / YhbY (CRM) domain 397 481 IPR001890 GO:0003723
Lal16g1013 838 Pfam CRS1 / YhbY (CRM) domain 213 296 IPR001890 GO:0003723
Lal16g1013 838 MobiDBLite consensus disorder prediction 75 109 - -
Lal16g1013 838 ProSiteProfiles CRM domain profile. 395 492 IPR001890 GO:0003723
Lal16g1013 838 SUPERFAMILY YhbY-like 607 705 IPR035920 -
Lal16g1013 838 SUPERFAMILY YhbY-like 397 488 IPR035920 -
Lal16g1013 838 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 6 775 - -
Lal16g1013 838 Coils Coil 490 510 - -
Lal16g1013 838 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1013 Lal-Chr16 6732654 6739995 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1013 - - ahf:112802226 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1013 16 6732654 6739995 Lal16g1013 16 6732654 6739995 ECH
Lal16g1013 16 6732654 6739995 Lal8g0430 8 2883302 2896530 PCT
Lal16g1013 16 6732654 6739995 Lal25g0456 25 3132156 3138290 PCT
Lal8g0430 8 2883302 2896530 Lal16g1013 16 6732654 6739995 PCT
Lal25g0456 25 3132156 3138290 Lal16g1013 16 6732654 6739995 PCT