Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0290 ATGGTACTCAACAAAGGTTTTTTCATTCTGGTCCTTCTTGCTCTTGTTCTTTCAATAAGCACTTCCAAAGTTACTTCAACTGATGAAGCTTTTGTTGGAGTTGACCCAATTCTTGATGTTACCTCCTTGAATAGGCAAAGTTTCCCTCCTGGCTTTATCTTTGGAGCTGGTTCCTCATCATATCAGTTTGAAGGTGCAGCAATGGAAGGTGGGAGAGGACCAAGTGTGTGGGATACCTTCACCCATAGATATCCAAACAAGATACAAGATAAAAGTAATGGAGATGTAGCCATTGACGAATATCACAACTACAAGGAGGATGTTGCAATTATGAAGGATATGAACTTGGACTCATACAGATTCTCCATATCTTGGTCTAGAATACTGCCAAATGGAAAGTTGAGTGGAGGTATAAATCAAGAAGGGGTGAACTATTACAACAACCTTATCAACGAGCTATTGGCTAATGGCATACAACCACTGGTGACTCTTTTTCATTGGGATCTTCCCCAAAACTTAGAAGATGAATATGGTGGCTTCTTGAGCCCTCTCATTATAAAAGATTTTGGGGATTATGCGGAAATTTGCTTCAAGGAATTCGGTGATAGAGTGAAGTATTGGGTTACTTTGAATGAACCATGGAGTTATAGCAGTAATGGGTATGCAAATGGAAGAATGGCACCAGGTCGTTGTTCTTCATGGCTGAACCCAAATTGCACTGGTGGTGACTCAGCCACAGAGCCATATTTGGTTACACACCACCAACTTCTTTCTCATGCTGCAGCAGTTCGTGTATACAAGACTATGTTTCAGGAATCTCAAAAGGGTTCAATAGGTATAACGTTGGTAGCTAATTGGTATCTACCACTCACAGATACCAAATTAGATCAAAAGGCAGCTGAAAGAGCAATTGACTTCATGTATGGATGGTATATGGATCCACTAACAACAGGAGATTATCCAAAAAGCATGCGTTCACTTGTGAGAACACGTTTGCCAAAGTTTACAGCAGAACAAAGCAAGTTACTGATTGGCTCTTTTGATTTTGTTGGTCTAAACTATTACTCTTCAACCTATGCCTCTGACGCACCTCATCTAATAAGCAATGCTAAACCTAGCTATGTCACTGATGCTTTGTTCACTCCAGCATTTGAGCGCAATGGGAAACCCATCGGTATAAAGATTGCTTCAGATTGGTTGTACGTTTATCCAAGAGGAATTCGAGACCTTTTGTTATACACCAAGGAAAAGTACAATAACCCCATCATTTACATTACTGAAAATGGTATAAATGAGTTTAATGATCCAACACTGTCACTTGAGGAATCACTTATAGATACTTTTAGAGTTGATTATCATTATCGTCATCTCTATTATCTTCAATCTGCGATTAGGAGTGGTGTAAATGTAAAGGGATATTATGTGTGGTCCTTGTTCGACAACTTTGAATGGTGCTCAGGCTATACAGTACGATTTGGAATGACCTTAGTGGATTACAAAAATGGGATGAAACGATACAAAAAACTTTCTGCATTATGGTTCAAGAGTTTTCTCAAGAAAGAAAGTAGATTCTATGATTCTAGTAAATAA 1590 0.3887 MVLNKGFFILVLLALVLSISTSKVTSTDEAFVGVDPILDVTSLNRQSFPPGFIFGAGSSSYQFEGAAMEGGRGPSVWDTFTHRYPNKIQDKSNGDVAIDEYHNYKEDVAIMKDMNLDSYRFSISWSRILPNGKLSGGINQEGVNYYNNLINELLANGIQPLVTLFHWDLPQNLEDEYGGFLSPLIIKDFGDYAEICFKEFGDRVKYWVTLNEPWSYSSNGYANGRMAPGRCSSWLNPNCTGGDSATEPYLVTHHQLLSHAAAVRVYKTMFQESQKGSIGITLVANWYLPLTDTKLDQKAAERAIDFMYGWYMDPLTTGDYPKSMRSLVRTRLPKFTAEQSKLLIGSFDFVGLNYYSSTYASDAPHLISNAKPSYVTDALFTPAFERNGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPIIYITENGINEFNDPTLSLEESLIDTFRVDYHYRHLYYLQSAIRSGVNVKGYYVWSLFDNFEWCSGYTVRFGMTLVDYKNGMKRYKKLSALWFKSFLKKESRFYDSSK 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0290 529 SUPERFAMILY (Trans)glycosidases 37 519 IPR017853 -
Lal1g0290 529 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 52 66 IPR033132 -
Lal1g0290 529 ProSitePatterns Glycosyl hydrolases family 1 active site. 423 431 IPR018120 -
Lal1g0290 529 Gene3D Glycosidases 31 520 - -
Lal1g0290 529 Pfam Glycosyl hydrolase family 1 45 521 IPR001360 GO:0004553|GO:0005975
Lal1g0290 529 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 4 525 - -
Lal1g0290 529 PANTHER GLYCOSYL HYDROLASE 4 525 IPR001360 GO:0004553|GO:0005975
Lal1g0290 529 PRINTS Glycosyl hydrolase family 1 signature 346 360 IPR001360 GO:0004553|GO:0005975
Lal1g0290 529 PRINTS Glycosyl hydrolase family 1 signature 423 431 IPR001360 GO:0004553|GO:0005975
Lal1g0290 529 PRINTS Glycosyl hydrolase family 1 signature 446 457 IPR001360 GO:0004553|GO:0005975
Lal1g0290 529 PRINTS Glycosyl hydrolase family 1 signature 467 484 IPR001360 GO:0004553|GO:0005975
Lal1g0290 529 PRINTS Glycosyl hydrolase family 1 signature 491 503 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0290 Lal-Chr1 1722957 1727176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0290 12 523 Glycoside Hydrolase AT5G44640 52.632 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0290 - K01188 gmx:100776708 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0290 1 1722957 1727176 Lal1g0290 1 1722957 1727176 ECH
Lal1g0290 1 1722957 1727176 Lal25g0379 25 2540086 2546450 ECH
Lal1g0290 1 1722957 1727176 Lal9g0187 9 1168252 1174368 LSH