Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0342 ATGTTTTCAGGGGTGACTGGTTTGATAAACAGGGGTCAGAAGATAAAAGGGACAGTGGTGTTGATGAGAAAAAATGTGTTGGATATCAACAGCATCACTAGTGTTGGAGGCATTCTAGGCACTGGACTCAACCTCGTTGGTTCTGCAGTTGATGGTCTTACTTCATTTTTGGGTCACAACATTGCCCTCAAGTTGATTAGTTCTACAAAAGCTGATGGAACTGGGAAAGGTAAAGTTGGAAAAGACACATACTTGGAAGGTATTATTAATTCTTTACCAACCTTAGGAGCTCATGAAAGTGCATTCAGCGTTCATTTTGAATGGGATGATGAATTTGGTATTCCTGGTGCATTTTATATCAAGAACTTTATGCAAGTTGAGTTCTACCTTAAGAGTCTCACTCTTGAAGATGTTCCAAACATTGGAACCATCCACTTTATCTGCAACTCTTGGGTTTATAATTCTAAGTCTTACAAGCAAGATCGCATTTTCTTTGCCAACCATACATATCTTCCAAGTGCAACACCAGCTCCACTTGTGAAGTACAGAGAAGAGGAATTGAAGCTTTTAAGAGGAGATGGAACGGGAGAGCGCAAGGAATATGACAGGGTCTATGATTATGATGTTTACAATGACTTGGGAAAACCCGATAGCGGTGTGCCTCGTCCTATTCTTGGAGGCTCTACCTTGCCTTACCCTCGAAGGGGAAGAACCGGAAGAAAAGCATCGGCGAAAGATCCAAACAGTGAGGTACCCGGCGACTTTGTTTACATTCCGAGAGATGAAGCATTTGGTCACACAAAGTCATCAGATTTCCTTGCTTCTGGACTAAAATCTGTAGCAGCAGATGTTGTACCTGTGTTGACAGATGCATTTGATGGAAATATCTTAAGTCTTGAGTTTGATAACTTCCAAGAAGTGAATAAACTTTATGAAGGTGGAATTACTCTGCCTACAAACTTTCTTAAGAAGTTTGCTCCTCCTATTCCAGTCCTCCAAGAAATTCTTAGAACTGATGGTGAACAATTCCTCAAGTTTCCACTCCCTAATGTGGTTCAAGTTGATAAGTCTGCATGGATGACTGATGAGGAATTCGGAAGAGAAACGATTGCTGGATTGAATCCTAACGACTTCCCAATAACTAGCAAGCTTGATAGCCAAGCCTATGGTGATAATAACAGTAAAATTACAAAAGAACATTTAGAGCTTAACTTGGGTGGGATCACTGTTGAACAGGCTATCCAGAACAAGAAATTGTTCATATTGGATCACCATGACTATCTCATTCCTTACCTGAGGAGAATTAATGCAACTACCACAAAGGCTTATGCCACAAGAACCATCTTTTTGTTGAAAGATGATGGTACTTTAACACCATTGGCCATTGAGTTGAGTAAGCCACATCCTCAAGGAGATGAACATGGTCCTGTTACTGATGTCTATGTGCCTGCACATGAAGGTCCTGAAGCTTATATTTGGTTATTGGCCAAGGCTTATGTTGTCGTAAACGACTCATGCTATCATCAACTAGTTAGCCATTGGTTAAACACTCATGCAGTTGTTGAGCCATTTATCATAGCGACAAATAGGCATCTGAGTGTGGTTCACCCAATTTATAAGCTTCTGTTTCCTCACTACCGTGACACCATGAACATAAACTCGCTCGCAAGGAAAGCCCTTGTCAACGCAGATGGTATTATAGAGACGACATTCTTGTGGGGCAAGTACTCTTTGGAATTGTCTGCTGTGATCTATAAGGATTGGGTTTTTCCGGATCAAGCACTACCTGCCGATCTTCTCAAGAGAGGAGTGGCAGTTAAGGACGATTCTTCTCCCCACGGCGTTCGCCTTGTGATTGAAGACTACCCTTATGCTTCTGATGGGTTAGAAATATGGGCAGCTATTAAGACATGGGTCACAGAATATGTCTCATACTACTACAAGTCAGATGCTGTACTCAAACAAGACCCTGAACTCCAAGCTTGGTGGAAAGAACTTGTGGAGGTGGGTCATGGTGATTTGAAAGATAAGTCATGGTGGCCTAAGTTGCAAACTCGCGAAGAGTTGATTGAAGCTTCCACTACCATCATATGGACTGCTTCAGCACTTCACGCAGCTGTTAACTTCGGACAGTATCCATATGGAGGTTATATCCTTAACAGGCCAACGCTTACTCGAAAATTCATTCCCGAGAAAGGTTCTGCTGAGTACGATCAGTTGTCTAAGAACCCCGAGAAGGTCTTTTTGAGTACAATCACAGGAAAGAAAGAGACACTTATTGACCTTACTGTTATTGAAATCTTGTCAAAGCATGCTTCTGATGAAGTGTACCTTGGGCAGAGAGATGGTGGTGACAATTTCACTTCTGATGCCGAGGCAGTACAGGCCTTTAAGAGGTTCGGAAAGAAGCTTGCAGATATCGAAAATACACTAGCAGTTAAGAACACTGATGCGACCTTGAAAAACCGCACCGGGCCAGCTAAGCTTCCTTACACTTTGCTTTATCCTTCAAGCAAGGAAGGATTGACTTTCAGAGGAATTCCCAACAGTATCTCTATCTAA 2562 0.4208 MFSGVTGLINRGQKIKGTVVLMRKNVLDINSITSVGGILGTGLNLVGSAVDGLTSFLGHNIALKLISSTKADGTGKGKVGKDTYLEGIINSLPTLGAHESAFSVHFEWDDEFGIPGAFYIKNFMQVEFYLKSLTLEDVPNIGTIHFICNSWVYNSKSYKQDRIFFANHTYLPSATPAPLVKYREEELKLLRGDGTGERKEYDRVYDYDVYNDLGKPDSGVPRPILGGSTLPYPRRGRTGRKASAKDPNSEVPGDFVYIPRDEAFGHTKSSDFLASGLKSVAADVVPVLTDAFDGNILSLEFDNFQEVNKLYEGGITLPTNFLKKFAPPIPVLQEILRTDGEQFLKFPLPNVVQVDKSAWMTDEEFGRETIAGLNPNDFPITSKLDSQAYGDNNSKITKEHLELNLGGITVEQAIQNKKLFILDHHDYLIPYLRRINATTTKAYATRTIFLLKDDGTLTPLAIELSKPHPQGDEHGPVTDVYVPAHEGPEAYIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKALVNADGIIETTFLWGKYSLELSAVIYKDWVFPDQALPADLLKRGVAVKDDSSPHGVRLVIEDYPYASDGLEIWAAIKTWVTEYVSYYYKSDAVLKQDPELQAWWKELVEVGHGDLKDKSWWPKLQTREELIEASTTIIWTASALHAAVNFGQYPYGGYILNRPTLTRKFIPEKGSAEYDQLSKNPEKVFLSTITGKKETLIDLTVIEILSKHASDEVYLGQRDGGDNFTSDAEAVQAFKRFGKKLADIENTLAVKNTDATLKNRTGPAKLPYTLLYPSSKEGLTFRGIPNSISI 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0342 853 SUPERFAMILY Lipoxigenase 171 853 IPR036226 -
Lal25g0342 853 Gene3D - 358 485 - -
Lal25g0342 853 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 170 IPR036392 GO:0005515
Lal25g0342 853 Pfam PLAT/LH2 domain 69 165 IPR001024 GO:0005515
Lal25g0342 853 Gene3D PLAT/LH2 domain 4 170 - -
Lal25g0342 853 Gene3D - 486 852 - -
Lal25g0342 853 SMART LH2_4 13 167 IPR001024 GO:0005515
Lal25g0342 853 MobiDBLite consensus disorder prediction 224 251 - -
Lal25g0342 853 ProSitePatterns Lipoxygenases iron-binding region signature 1. 508 522 IPR020833 GO:0016702|GO:0046872
Lal25g0342 853 Gene3D - 171 267 - -
Lal25g0342 853 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 7 853 - -
Lal25g0342 853 ProSiteProfiles PLAT domain profile. 41 166 IPR001024 GO:0005515
Lal25g0342 853 CDD PLAT_LH2 14 167 IPR042057 -
Lal25g0342 853 Pfam Lipoxygenase 179 836 IPR013819 GO:0016702|GO:0046872
Lal25g0342 853 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Lal25g0342 853 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Lal25g0342 853 PRINTS Plant lipoxygenase signature 201 217 IPR001246 GO:0016491
Lal25g0342 853 PRINTS Plant lipoxygenase signature 231 250 IPR001246 GO:0016491
Lal25g0342 853 PRINTS Plant lipoxygenase signature 298 319 IPR001246 GO:0016491
Lal25g0342 853 PRINTS Plant lipoxygenase signature 344 360 IPR001246 GO:0016491
Lal25g0342 853 PRINTS Plant lipoxygenase signature 443 467 IPR001246 GO:0016491
Lal25g0342 853 PRINTS Plant lipoxygenase signature 765 779 IPR001246 GO:0016491
Lal25g0342 853 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 169 853 IPR013819 GO:0016702|GO:0046872
Lal25g0342 853 ProSitePatterns Lipoxygenases iron-binding region signature 2. 535 545 IPR020834 GO:0016702|GO:0046872
Lal25g0342 853 PANTHER LIPOXYGENASE 7 853 IPR000907 GO:0016702|GO:0046872
Lal25g0342 853 PRINTS Lipoxygenase signature 490 507 IPR013819 GO:0016702|GO:0046872
Lal25g0342 853 PRINTS Lipoxygenase signature 508 525 IPR013819 GO:0016702|GO:0046872
Lal25g0342 853 PRINTS Lipoxygenase signature 528 548 IPR013819 GO:0016702|GO:0046872
Lal25g0342 853 Gene3D - 268 357 IPR027433 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0342 Lal-Chr25 2333171 2337883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0342 1 853 Acyl Lipid Metabolism Gene Families AT1G55020 55.758 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0342 K15718 - gmx:100803358 1375.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0342 25 2333171 2337883 Lal20g1068 20 14629816 14636618 PCT
Lal20g1065 20 14536208 14542345 Lal25g0342 25 2333171 2337883 PCT