Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1065 ATGCTAGGTGGGCTTTTTTCATCAAAGATCAAAGGCACAGTGGTGTTAATGCAAAAGAATGTGTTAGATATTAATAGTTTACTTAGTGCTGAAAAGGTTGTGAATGGAGTATTAGAAGGAATTACTTCAATATGGGACACTGCTTCTTCCTTCTTGGGTCGTTCAGTTTCACTTCAGTTGATTAGTGCTACTAAAACTGATTCAAGTGGGAAAGGAAAAGTTGGAAATAAGGCATATTTAGAAGGTGCTATCAACAATTTGCCAACTTTGGGAGCACAACAAAATGCATTCACCATTCATTTTGAATATGATAGTAATAACTTTGGAATTCCTGGTGCATTTTATATTCAGAACTATATGACAGATGAGTTCTTTCTTGTGAGTTTGACTCTTGAAGATATTCCTAATCATGGAACCATCCACTTTGCTTGCAACTCATGGATTTACAATTTCAAAAAGTATCAAAATGATCGCATTTTCTTTGCCAACAATACTTATCTACCAAGTCAGACACCAGCTGCACTAGTCTACTACAGACAATTAGAATTGCAGAATTTAAGAGGAGATGGAATAGGGGAGAGATTGGAATGGGAAAGAATGTATGATTACGATGTTTACAACGATTTAGGCGAGCCCGACAAAGGTGCAAGTTATGCTAGAAAAGTTTTGGGAGGATCTAGTGCCTATCCTTATCCTCGCAGGGGAAGAACAGGCAGGCCAAAAACACAGACAGATCCTAACAGTGAGAGCAGGAGTGGCAGTGTTTATATTCCAAGAGATGAAGCTTTTGGTCACTTGAAATCCTCTGATTTTCTTATCTATGGACTGAAATCTGTAGCACAAGATGTAACTTCTGTGTTACAATCTGTATTTGAATTAGATTTCACACCAAATGAGTTTGAAACCTTTGATGAAGTGAGAGAACTCTATGAAGGAGGAATTAAGCTTCCCACAGATGCAATTAGCAAAATTAGCCCTTTACCAGTGTTGAATGAAATTTTTCGAACCGATGGCGAGCAGTTCCTCAAGTTTCCAACACCTAAAGTTATTCAAGGTATCCTACCCGATGTTTTAAATTCCGATGGCAGTTATATTGCGTTTACCACAATCACGGAAAATAGCAAGAAAACGCAGCCACAATTGTCATTGCAATGCCGTTGCAACGACCCAAAATCACAAAATTGCGGCTTGAGCAAATCTGCATGGATGACAGATGAAGAATTTGGAAGGGAAATTATTGCTGGTGTAAATCCTGGCTTAGTTCATAGTCTTGAAGTTTTTCCTCCAGCTAGTAAGCTAGATAGTGCAATCTATGGTGATCAAACTAGTACAATAACCAAAGAACATATTGAACATAACTTAGATGGACTCACTACAGATCTGGCTATCGAGAGCAAGAAATTGTTCATACTTGATCACCATGACACAATAATTCCATATTTGAGGCTAATAAACTCAACTTCTACAAAGGCTTATGCTTCTAGAACCATCCTTTTCTTGAAAAGTGATGGAACTTTAAAGCCAGTGGCCATTGAGTTAAGTTTGCCACATCCTCAGGGAGATCAATATGGTGTTGTTAGTAATGTTTACTTGCCTGCAGTAGAAGGTGTTGAAAGTACTATTTGGTTATTGGCTAAGGCTTATGTTATTGTTAATGATTCATGCTATCATCAACTTGTTAGTCACTGGTTGAATACTCATGCAGTTGTTGAGCCATTTGTCATAGCAACACACAGGCAGCTCAGCGTTGTTCACCCGATTCATAAACTATTGTATCCTCATTATCGTGACACGATGAATATTAATGCCCTTGCTAGGGGATCCCTGGTCAACGCAGATGGCATTATCGAAAAAACGTTCTTGTGGGGCGGTTATGCGATGGAAATATCTTCTGTAGTTTACAAGGATTGGGTTTTTACTGATCAAGCACTACCTGCTGATCTTATCAAGAGAGGAATAGCAGTGGAGGATTCAAGTTCCCCGCATGGTCTTCGCCTGGTGATAGAGGACTACCCTTATGCTGTTGATGGACTCGACATTTGGGGCGCGATTAAGACATGGGTCGAAGAGTATGTCTCCTTATACTACACTTCCGATGACACAATTAAGCAAGACATCGAACTCCAATCTTGGTGGAAAGAAGTCGTAGAGGTTGGTCACGGTGACAAGAAAGACGAGCCATGGTGGCCTAAACTGCAAACTCGAGAAGATCTCATTCATGTTAGCACTATTGTCATATGGACTGCTTCGGCGCTTCATGCAGCTGTTAATTTTGGACAATATCCGTATGGAGGATTCATCTTAAACCGTCCAACTCTTAGTAGGCGATTTATGCCCGAGGAAGGAACCGATGAGTACAACGAGCTAATCACGAACCCTCAAAAGGCTTACTTAAGAACTATTACACCTAAGTTCCAAACTCTCATTGATCTTTCAGTTATAGAAATCCTATCAAGGCATGCTTCTGATGAGCTCTACCTTGGGCAAAGAGATAGTGAATATTGGACTTCTGATACAAAAGCATTGGAGGCCATCAAGAAGTTTGGAACAACACTAGCTGAAATTGAGGCACAACTAGTAGAGAGGAACAACAATGAGGCATTGCGAAACCGAGTTGGTCCGGTTACCATGCCTTACACACTACTTCATCCTTCAAGTGAGGAAGGACTAACTTTTAGAGGAATACCCAACAGTATCTCCATCTAA 2706 0.4002 MLGGLFSSKIKGTVVLMQKNVLDINSLLSAEKVVNGVLEGITSIWDTASSFLGRSVSLQLISATKTDSSGKGKVGNKAYLEGAINNLPTLGAQQNAFTIHFEYDSNNFGIPGAFYIQNYMTDEFFLVSLTLEDIPNHGTIHFACNSWIYNFKKYQNDRIFFANNTYLPSQTPAALVYYRQLELQNLRGDGIGERLEWERMYDYDVYNDLGEPDKGASYARKVLGGSSAYPYPRRGRTGRPKTQTDPNSESRSGSVYIPRDEAFGHLKSSDFLIYGLKSVAQDVTSVLQSVFELDFTPNEFETFDEVRELYEGGIKLPTDAISKISPLPVLNEIFRTDGEQFLKFPTPKVIQGILPDVLNSDGSYIAFTTITENSKKTQPQLSLQCRCNDPKSQNCGLSKSAWMTDEEFGREIIAGVNPGLVHSLEVFPPASKLDSAIYGDQTSTITKEHIEHNLDGLTTDLAIESKKLFILDHHDTIIPYLRLINSTSTKAYASRTILFLKSDGTLKPVAIELSLPHPQGDQYGVVSNVYLPAVEGVESTIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFVIATHRQLSVVHPIHKLLYPHYRDTMNINALARGSLVNADGIIEKTFLWGGYAMEISSVVYKDWVFTDQALPADLIKRGIAVEDSSSPHGLRLVIEDYPYAVDGLDIWGAIKTWVEEYVSLYYTSDDTIKQDIELQSWWKEVVEVGHGDKKDEPWWPKLQTREDLIHVSTIVIWTASALHAAVNFGQYPYGGFILNRPTLSRRFMPEEGTDEYNELITNPQKAYLRTITPKFQTLIDLSVIEILSRHASDELYLGQRDSEYWTSDTKALEAIKKFGTTLAEIEAQLVERNNNEALRNRVGPVTMPYTLLHPSSEEGLTFRGIPNSISI 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1065 901 Gene3D - 535 900 - -
Lal20g1065 901 Pfam Lipoxygenase 175 351 IPR013819 GO:0016702|GO:0046872
Lal20g1065 901 Pfam Lipoxygenase 395 884 IPR013819 GO:0016702|GO:0046872
Lal20g1065 901 Gene3D - 267 352 IPR027433 -
Lal20g1065 901 PRINTS Lipoxygenase signature 539 556 IPR013819 GO:0016702|GO:0046872
Lal20g1065 901 PRINTS Lipoxygenase signature 557 574 IPR013819 GO:0016702|GO:0046872
Lal20g1065 901 PRINTS Lipoxygenase signature 577 597 IPR013819 GO:0016702|GO:0046872
Lal20g1065 901 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 166 IPR036392 GO:0005515
Lal20g1065 901 Pfam PLAT/LH2 domain 66 161 IPR001024 GO:0005515
Lal20g1065 901 ProSitePatterns Lipoxygenases iron-binding region signature 2. 584 594 IPR020834 GO:0016702|GO:0046872
Lal20g1065 901 Gene3D - 400 534 - -
Lal20g1065 901 ProSiteProfiles PLAT domain profile. 34 162 IPR001024 GO:0005515
Lal20g1065 901 PANTHER LIPOXYGENASE 394 901 IPR000907 GO:0016702|GO:0046872
Lal20g1065 901 PANTHER LIPOXYGENASE 4 352 IPR000907 GO:0016702|GO:0046872
Lal20g1065 901 Gene3D - 167 266 - -
Lal20g1065 901 SUPERFAMILY Lipoxigenase 167 901 IPR036226 -
Lal20g1065 901 Gene3D PLAT/LH2 domain 6 166 - -
Lal20g1065 901 MobiDBLite consensus disorder prediction 227 255 - -
Lal20g1065 901 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 165 901 IPR013819 GO:0016702|GO:0046872
Lal20g1065 901 SMART LH2_4 8 163 IPR001024 GO:0005515
Lal20g1065 901 CDD PLAT_LH2 9 163 IPR042057 -
Lal20g1065 901 PRINTS Plant lipoxygenase signature 132 150 IPR001246 GO:0016491
Lal20g1065 901 PRINTS Plant lipoxygenase signature 158 179 IPR001246 GO:0016491
Lal20g1065 901 PRINTS Plant lipoxygenase signature 197 213 IPR001246 GO:0016491
Lal20g1065 901 PRINTS Plant lipoxygenase signature 230 249 IPR001246 GO:0016491
Lal20g1065 901 PRINTS Plant lipoxygenase signature 297 318 IPR001246 GO:0016491
Lal20g1065 901 PRINTS Plant lipoxygenase signature 342 358 IPR001246 GO:0016491
Lal20g1065 901 PRINTS Plant lipoxygenase signature 814 828 IPR001246 GO:0016491
Lal20g1065 901 ProSitePatterns Lipoxygenases iron-binding region signature 1. 557 571 IPR020833 GO:0016702|GO:0046872
Lal20g1065 901 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 4 352 - -
Lal20g1065 901 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 394 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1065 Lal-Chr20 14536208 14542345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1065 7 901 Acyl Lipid Metabolism Gene Families AT1G55020 55.788 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1065 K15718 - gmx:547869 1297.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1065 20 14536208 14542345 Lal25g0342 25 2333171 2337883 PCT