Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1068 ATGTTTTCAGGTGTGTCAGGTTTCATCAACAGAAGCCAGAAACTTAAAGGGACTGTAGTGTTGATGCGCAAGAATGTGTTGGACGTGAATAAGGCTGCCGGGGTTACTAGTGATGTTACTAGTGGTGATGTTATTCGCGGCGTCGGGGGAATACTCGGCGGCGGCATCGACCTTGTGACCACCGTGGCTGGCACCACTATTGACAATCTCACTTCCTTCTTGGGACGGAACGTTGGTCTCCAGCTCATTAGTGCTACTGCCACTGACTCAAGTGGAAAAGGGAAAGTGGGTAAGGAAACATTTTTGGAAGGTATTATTCTGTCGTTACCAACATTGGGAGCAGGCCAATCTGCATTTGATATTCATTTCGAATGGGATAGTAACTTTGGAATTCCAGAAGCATTTTACATCAAAAATTATATGCAAGTTGAGTTCTTCCTTGTTAGTTTGACTCTTGAAGATGTTCCAAACCATGGAACTATTCGCTTTGTTTGCAACTCATGGGTTAATAACTTCACAAGTTATGAAAAGAATCGCATTTTCTTTGTCAACAAGGTTATCACTATTGCGACATATCTTCCAAGTGAAACACCAGCTCCACTAGTTAAGTACAGAGAAGAAGAATTGAATACTTTAAGAGGAAATGGAACAGGTGAACGTAAAGAATGGGAAAGAATCTATGATTATGATGTTTACAATGATTTGGGTAAGCCAGATAGTGGTGACAAATATGCTCGCCCAATCCTTGGAGGTTCTAGCACTCATCCCTACCCTCGCAGGGTTAGAACTGGTAGAAGACCAACTAGAAAAGATCCTAAGAGTGAAAGTCCAGGGGACTCTTATATTCCAAGAGATGAAAATTTTGGTCACCTAAAGTCATCAGATTTCCTTATATATACACTAAAATCACTATCACAAGCTGTATTGCCTGCACTTCAGTCAGTTATTTTTGGTGAGTTTGGTAGCTTCGATGAAGTGCGTGGACTCCAAGAAGGCGGAATTAAGCTACCTACCGATGTTCTTAGTGCCATTAGCCCCTTACCAGCCCTCAAGGAAACTTTTCGCACCGATGGTGAACAAGTTCTCAAGTTTCCACCACCTCATGTGATTAATGGAAACAGCCTTGCTGCTGTTCAAATCCTGGAAACAGCCTCGCTACTTGTGGGCAAATCTGCATGGATGACTGATGAAGAATTTGCAAGGGAGATGATTGCTGGTGTAAACCCTTGTGTAATTCGTCTTCTACAAGAGTTCCCAGTACAGAGCAAACTAGATGCTACAATCTATGGTGATCAAACCAGTAAAATAACAAAAGAACAATTAGAGATTAACCTTGATGGGAAAACTGTAGAAGAGGCACTTAGCTTTCAGAGATTGTTCATATTGGATTACAACGACGCATTCATTCCGTATTTGAGAAAGATCAATGAAATTGCAAAGGCTTATGCTACCAGGACAATCCTTTTCTTAAAAGATGATGGGACTTTAAAGCCAATTGCTATTGAATTAAGTTTGCCGCATCGAAACGGAGATCAATTCGGAGCTGAGAGTAAAGTTATCTTGCCTGCGACAGAAGGTGCCGAAAGTACAATTTGGCTATTAGCCAAAGCTCATGTAATTGTAAATGACTCATGCTATCATCAGCTAATGAGTCACTGGTTGAATACTCATGCAGTGATTGAGCCATTTGCCATAGCAACAAATAGGAATTTAAGTGTGCTTCACCCGATTTATAAACTTCTCTATCCTCACTACCGCGACACGATAAATATCAATGGTCTTGCTCGACAATCGCTAATTAATGCAGATGGAATTATCGAGCAGTCATTTTTGCCCGGCCCTTATTCTATTGAGATGTCCTCAGCAGTTTACAAGAACTGGGTTTTCACTGACCAAGCATTACCAGCTGATCTCATCAAGAGAGGATTGGCAATTAAGGATCCTTCTTCCCCCCATGGCCTACAACTTCTAATAAAGGACTATCCTTACGCTACCGATGGATTAGAGATTTGGGATGCTATTAACACATGGGTTAGAGAATATATATCATTGTATTACCCAACAGACGAGGCAATTCGAAAAGACGCTGAACTACAAGCATGGTGGAAGGAAGCTGTAGAGAAGGGTCATGAAGACTTGAAAGATAAGCCATGGTGGCCTAAGGTGCAGACTGTTGAAGAGCTGATTCAATCCACCTCAATTATCATATGGACTGCTTCTGCTCTTCATGCTGCTGTTAATTTCGGTCAATATCCTTATGGAGGTTATATCTTGAACCGCCCGACTCTTAGCCGAAGATTGATCCCCGAACAAGGAACTCCAGAGTATGATGAAATGGTAAAGAGTCCTCAAACAGCCTATTTAAGAACTATTACACCAAAGTACCAAACCATTGTTGATCTTTCAGTTATAGAAATATTGTCAAGGCATGCTTCTGATGAGGTCTACCTTGGCCAAAACAATGATCCAAATTGGACATCTGATTCAAAAGCATTACAAGCATTCCAAAAGTTTGGAAAAAAGTTGGTAGAAATTGAAGAGAAAATTAATGCAAGAAATAGTGATCCAAGTCTGAGAAACAGAACTGGGCCTGTTCATCTACCTTACACTTTGCTCCTTCCAACTAGTAAGGAAGGGTTAACATTCAGAGGAATTCCAAATAGTATCTCCATCTAA 2676 0.4103 MFSGVSGFINRSQKLKGTVVLMRKNVLDVNKAAGVTSDVTSGDVIRGVGGILGGGIDLVTTVAGTTIDNLTSFLGRNVGLQLISATATDSSGKGKVGKETFLEGIILSLPTLGAGQSAFDIHFEWDSNFGIPEAFYIKNYMQVEFFLVSLTLEDVPNHGTIRFVCNSWVNNFTSYEKNRIFFVNKVITIATYLPSETPAPLVKYREEELNTLRGNGTGERKEWERIYDYDVYNDLGKPDSGDKYARPILGGSSTHPYPRRVRTGRRPTRKDPKSESPGDSYIPRDENFGHLKSSDFLIYTLKSLSQAVLPALQSVIFGEFGSFDEVRGLQEGGIKLPTDVLSAISPLPALKETFRTDGEQVLKFPPPHVINGNSLAAVQILETASLLVGKSAWMTDEEFAREMIAGVNPCVIRLLQEFPVQSKLDATIYGDQTSKITKEQLEINLDGKTVEEALSFQRLFILDYNDAFIPYLRKINEIAKAYATRTILFLKDDGTLKPIAIELSLPHRNGDQFGAESKVILPATEGAESTIWLLAKAHVIVNDSCYHQLMSHWLNTHAVIEPFAIATNRNLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEQSFLPGPYSIEMSSAVYKNWVFTDQALPADLIKRGLAIKDPSSPHGLQLLIKDYPYATDGLEIWDAINTWVREYISLYYPTDEAIRKDAELQAWWKEAVEKGHEDLKDKPWWPKVQTVEELIQSTSIIIWTASALHAAVNFGQYPYGGYILNRPTLSRRLIPEQGTPEYDEMVKSPQTAYLRTITPKYQTIVDLSVIEILSRHASDEVYLGQNNDPNWTSDSKALQAFQKFGKKLVEIEEKINARNSDPSLRNRTGPVHLPYTLLLPTSKEGLTFRGIPNSISI 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1068 891 Pfam Lipoxygenase 201 874 IPR013819 GO:0016702|GO:0046872
Lal20g1068 891 Pfam PLAT/LH2 domain 90 182 IPR001024 GO:0005515
Lal20g1068 891 MobiDBLite consensus disorder prediction 268 286 - -
Lal20g1068 891 PRINTS Lipoxygenase signature 529 546 IPR013819 GO:0016702|GO:0046872
Lal20g1068 891 PRINTS Lipoxygenase signature 547 564 IPR013819 GO:0016702|GO:0046872
Lal20g1068 891 PRINTS Lipoxygenase signature 567 587 IPR013819 GO:0016702|GO:0046872
Lal20g1068 891 Gene3D - 525 890 - -
Lal20g1068 891 SUPERFAMILY Lipoxigenase 193 891 IPR036226 -
Lal20g1068 891 ProSitePatterns Lipoxygenases iron-binding region signature 2. 574 584 IPR020834 GO:0016702|GO:0046872
Lal20g1068 891 PRINTS Plant lipoxygenase signature 153 171 IPR001246 GO:0016491
Lal20g1068 891 PRINTS Plant lipoxygenase signature 223 239 IPR001246 GO:0016491
Lal20g1068 891 PRINTS Plant lipoxygenase signature 256 275 IPR001246 GO:0016491
Lal20g1068 891 PRINTS Plant lipoxygenase signature 417 436 IPR001246 GO:0016491
Lal20g1068 891 PRINTS Plant lipoxygenase signature 482 506 IPR001246 GO:0016491
Lal20g1068 891 PRINTS Plant lipoxygenase signature 804 818 IPR001246 GO:0016491
Lal20g1068 891 Gene3D PLAT/LH2 domain 4 187 - -
Lal20g1068 891 PANTHER LIPOXYGENASE 7 891 IPR000907 GO:0016702|GO:0046872
Lal20g1068 891 Gene3D - 292 374 IPR027433 -
Lal20g1068 891 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 191 891 IPR013819 GO:0016702|GO:0046872
Lal20g1068 891 Gene3D - 391 524 - -
Lal20g1068 891 CDD PLAT_LH2 14 184 IPR042057 -
Lal20g1068 891 ProSiteProfiles PLAT domain profile. 58 183 IPR001024 GO:0005515
Lal20g1068 891 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 185 IPR036392 GO:0005515
Lal20g1068 891 Gene3D - 193 291 - -
Lal20g1068 891 SMART LH2_4 13 184 IPR001024 GO:0005515
Lal20g1068 891 ProSitePatterns Lipoxygenases iron-binding region signature 1. 547 561 IPR020833 GO:0016702|GO:0046872
Lal20g1068 891 MobiDBLite consensus disorder prediction 242 286 - -
Lal20g1068 891 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 7 891 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1068 Lal-Chr20 14629816 14636618 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1068 12 891 Acyl Lipid Metabolism Gene Families AT1G55020 54.961 0.0 974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1068 K15718 - gmx:547694 1294.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0342 25 2333171 2337883 Lal20g1068 20 14629816 14636618 PCT