Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0327 AACAATGAGAGTTGTTCTACCCAGCTTATTGATGGAGATGGTACATTCAATGCTTCTGGGATTGAAAAGTTCATGAAGGAGGTTAAATTAGCAGAATGTGGACTTTCCTATGCTGTTGTTTCAATTATGGGTCCACAAAGTAGTGTCTTTGCATTTCAGGATTTGTCTCAAACAACCAAAGGAATTTGGATGGCCAATTGTACTGGTATAGAGCCTTGTACGCTGGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGGGGAGAGGATGATACTGCATTTGAAAAGCAGAGTGCTCTTTTTGCTTTGGCTGTTTCTGATATAGTGCTAATAAACATGTGGTGTCATGACATTGGACGTGAGCAAGCTGCAAATAAGCCACTTTTAAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCGCGAAAAACAACACTTCTGTTTGTCATACGCGATAAAACAAAGACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATCCAGAGGATATGGGACTCTGTTCCTAAACCACAGGCCCACACGGATACTCCACTAAGTGAATTTTTCAATGTTGAAGTTGTTGCGCTTTCTAGTTATGAAGAAAAGGAAGAGCAATTTAAGGAGCAGGTTGCCAGCTTGAGGCAACGATTCTATCATTCTATTGCTCCTGGTGGGCTTGCGGGGGATCGACGTGGAGTAGTTCCCGCTTCAGGCTTCTCTTTCAGTGCTCAGCAAATCTGGAAAGTCATTAAGGAGAACAAGGATCTCGACCTTCCTGCACACAAGGTCATGGTTGCTACTGTTAGATGTGATGAAATTGCCAATGAGAAATATTCCCTTTTTGCCGCGAATAAGGACTGGTGTCAGCTGGAAGAGGCTGTGAAATCTGGCCCTGTTCCTGGATTTGGGAAAAAACTCAACTCACTTCTTGATACATGTCTTTCAGAGTATGATGTTGAAGCCAATTATTTTGATGAAGGTGTGAGATCTGCAAAACAAAATCAGCTTCAAGAAAAATTGTTCCAACTTGCCCAACCATCATTCCTAGCTGTGCTGGGACATATGAGGTCTGCAACTTTTGACAAGTTCAAGGAAGCATTTGACAAGGCTTTGAATGGGGGGGAAGCATTTTCTGCTGCTGCAAATAACTGCATAGGGTCATATATGACTCAATTTGATGAAGGATGCACAGATATTATTATTGAAGTAGCAAACTGGGATACATCTAAAGTAAGGGAGAAACTACAGCGTGATATTGATGCACATGTTGCATCTGTACATTCAGCTAAGATGTCAGAACTTACCTCATCATATGAGGCAAACTTCTTGGGAAGTTTTGCTGATAGTAGTGCCTTGCAGGAAAAACTGAAGGTGGCCTTGTCTGGATCTGTTGAAGCTCTTTTGGATGAAGCCAATGGTGATACTTGGCCATCAATAAGGAACCTTCTCAGTCGTGAGACTAAATCAGCTGTTTGTGGGTTTTCTGCTGAGCTTACCAGATTTGATATGGATGAACAAACAAGGAAAAACTTGACAGTAAGTTTAGAGGATTATGCAAGGGGTGTGATAGAAGCAAAGGCTAGGGAAGAAGCTGGCAGAGTTCTAATCCGTATGAAGGATAGGTTTACAACAGTATTTGGTCGTGATTCTGATTCAATGCCTCGTGTTTGGACGGGAAAAGAAGATATTCGAGCCATCACTAAGACTGCCCGAATGGAATCCTTGAAGCTGCTATCTGTTATGACTGTAATTCGTTTAGATGATGATGATACTGATAATGTCGAGAAAACATTAGCAGTTCTGTTGGTGGATTCATCAAACAGTTCTGCTAAAAATAGAAGCATGGCAGAAGTCGATCCACTGGCTTCAAGCACTTGGGAGAAGTTGGCGAACAAGCGCAGTAACCACTGGCTACCTCCACCATGGGCGATTGTTGCTTTACTTATTCTTGGATTTAATGAATTTATGACACTTCTAAGAAATCCCTTGTATTTGTTTTTCATCTTCATTGGTTTTCTTCTCATTAAAGCCCTATGGGTGCAACTTGACATCAAGAGTGAATTTCGCAATGGAGCTCTTCCGGGAATCATATCTCTGTCTAGCAAGTTTATTCCAACTATTATGAACATTATGAGAAAACTAGCAGAACAGGGAGAGAATCCAGCAACTAACACTTCTCAGAGAAATCAACCTAGAAGCAATCACAATTCTGATACTGCTGATAGTGCAATGTCATCTACAGCTTCTTCATCTGACATAACTTCATTCAACAATAAAGCAGAATATACCAGTCCATCCAAATATGACTAA 2319 0.4105 NNESCSTQLIDGDGTFNASGIEKFMKEVKLAECGLSYAVVSIMGPQSSVFAFQDLSQTTKGIWMANCTGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLENLEPVLREDIQRIWDSVPKPQAHTDTPLSEFFNVEVVALSSYEEKEEQFKEQVASLRQRFYHSIAPGGLAGDRRGVVPASGFSFSAQQIWKVIKENKDLDLPAHKVMVATVRCDEIANEKYSLFAANKDWCQLEEAVKSGPVPGFGKKLNSLLDTCLSEYDVEANYFDEGVRSAKQNQLQEKLFQLAQPSFLAVLGHMRSATFDKFKEAFDKALNGGEAFSAAANNCIGSYMTQFDEGCTDIIIEVANWDTSKVREKLQRDIDAHVASVHSAKMSELTSSYEANFLGSFADSSALQEKLKVALSGSVEALLDEANGDTWPSIRNLLSRETKSAVCGFSAELTRFDMDEQTRKNLTVSLEDYARGVIEAKAREEAGRVLIRMKDRFTTVFGRDSDSMPRVWTGKEDIRAITKTARMESLKLLSVMTVIRLDDDDTDNVEKTLAVLLVDSSNSSAKNRSMAEVDPLASSTWEKLANKRSNHWLPPPWAIVALLILGFNEFMTLLRNPLYLFFIFIGFLLIKALWVQLDIKSEFRNGALPGIISLSSKFIPTIMNIMRKLAEQGENPATNTSQRNQPRSNHNSDTADSAMSSTASSSDITSFNNKAEYTSPSKYD 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0327 772 CDD GBP 33 223 - -
Lal25g0327 772 PANTHER PROTEIN SEY1 4 49 IPR008803 -
Lal25g0327 772 PANTHER PROTEIN SEY1 51 631 IPR008803 -
Lal25g0327 772 PANTHER PROTEIN SEY1 633 755 IPR008803 -
Lal25g0327 772 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 48 262 - -
Lal25g0327 772 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 51 631 - -
Lal25g0327 772 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 4 49 - -
Lal25g0327 772 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 633 755 - -
Lal25g0327 772 MobiDBLite consensus disorder prediction 722 772 - -
Lal25g0327 772 Gene3D - 11 232 IPR027417 -
Lal25g0327 772 Coils Coil 199 219 - -
Lal25g0327 772 Pfam Sey1 three-helix bundle domain 635 720 IPR046758 -
Lal25g0327 772 Pfam Sey1 three-helix bundle domain 304 632 IPR046758 -
Lal25g0327 772 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 1 233 IPR030386 GO:0005525
Lal25g0327 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 258 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0327 Lal-Chr25 2235351 2245431 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0327 K22698 - gmx:100777656 1181.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0327 25 2235351 2245431 Lal20g1092 20 15070174 15078974 PCT
Lal25g0327 25 2235351 2245431 Lal1g1361 1 15438331 15454580 PCT
Lal20g1092 20 15070174 15078974 Lal25g0327 25 2235351 2245431 PCT
Lal1g1361 1 15438331 15454580 Lal25g0327 25 2235351 2245431 PCT