Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1092 ATGGCGAGTAGTGATAGTAGTTGTTCGACTCAGCTTCTTGATGGGGATGGCGTATTCAATGTTTCTGGGATCGAAACTTTCATGAAAGAAGTGAAGTTGGCTGAATGTGGGCTTTCGTATGCTGTAGTTTCTATTATGGGTCCACAAAGTAGTGGCAAGAGCACGCTATTAAATCATTTATTTGGTACCAACTTCAGAGAGATGGATGCTTTTAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGTGCTGGCATAGAGCCTTGTACATTGGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGCGGAGAGGATGATACCGCATTCGAAAAGCAGAGTGCTTTATTTGCTCTCGCTGTCTCAGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCGCTTTTGAAAACTGTCTTCCAGGTTATGATGAGACTGTTTAGTCCACGGAAAACAACAATGTTGTTTGTCATACGTGATAAAACAAGGACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCACAGGCTCACATGGAAACCCCACTTAGTGAATTTTTCAATGTTGAAGTTGTCGCTCTTTCTAGTTATGAAGAAAAGGAAGAACAATTTAAAGAACAGGTGGCCAGCTTGAGGCAACGATTCCATCATTCCATTGCTCCCGGTGGGCTTGCTGGGGATCGTCGTGGAGTAGTACCTGCTTCGGGCTTTTCATTTAGTTCTCAGCAGATATGGAGAGTCATCAAGGAAAACAAAGACCTCGACCTTCCTGCACATAAGGTTATGGTTGCTACTGTACGATGTGAAGAAATTGCTAATGAAAAATATGCCGCTTTTGCTGCAAACGAGGAATGGTGTCAATTGGAAGAAGCTGTGCAATCTGGCCAAATTACAGGATTTGGGAAAAAGCTAAATTCACTACTTGATGTGTATTTGTCAGAGTATGACGCCGAAGCGATTTATTTTGATGAAGGCGTGAGATCTGCTAAACAAAAGCAACTTCAAGAAAAATTGTTGCAACTTGTTCAACCTGCATTCCAATCTGCACTAGGGCATGTAAGGTCTGGAACTTTGGATAAATTCAAGGAGACATTTGACAAGGCTTTGAAAGGAGGGGAAGGGTTTTCCGAAGCTGCTAATAATTGCATCGGGTCTTGTATGGCTCAATTTGATAAAGCATGTTTAGATGTTGTTATTGAACATGCAAACTGGGATGCATCTAAAGTAAGGGAGAAACTGCAGCGTGATATTGATGCACATGTTGCATCTGTGCGTGCAGAAAAAATATCGGAACTTACTACAACATATGAGGAAAAACTGAAAGAATCCTTGTCTGGACCTGTTGAAGCTCTTTTGGATGGAGCTAATAGTGATACTTGGTCATCAATAAAGAACCTTCTTAGGCGTGAGACTGAATCAGCTGTTTCGGGGTTCTCTGGTGCACTTTCTCGGTTTGATATGGATGAAGACACAAGGCATAAAATGATTTTGAGTATAGAGGATTATGCAAGGGGTGTGGTAGAAGGAAAGGCTAGGGAAGAGGCTGGAAGAGTTCTAATCCGTATGAAAGACAGGTTTACAATGTTGTTTAGCCATGATTCTGATTCAATGCCTCGTGTTTGGACGGGGAAAGAAGATATTCGAGCCATCACCAAGACTGCTCGCTCAGCTTCTTTGAAGTTGCTATCTGTTATGGCTGCAATTCGTTTGGACGACAATGCTGATAGTATTGAGAAAACATTAGTAGTTGCATTGGTTGATTCATCAAACAATGCTGTTAATAGGAGCATCACAATGGTTGACCCACTAGCTTCTAGCAACTGGGAACAGGAGGCTAACAAGCGTAATAACAATTGGTTACCTCCCCCATGGGCAATAGTTGCTTTGGTTATTCTGGGATTCAATGAATTTATGACACTTCTAAGAAATCCCTTGTATTTGGGTGTCATCTTTGTTGGGTATCTTCTCGTTAAAGCCCTATGGATGCAGCTTGACATTTCGGGTGAATTCCGCAATGGAGCTCTTCCTGGAATCATATCCTTGTCTAGCAAATTTATTCCAACTATCATGAACCTTATCAAAAGACTAGCAGAAGAAGGACAGAACCCTGCAAATAACAACCCTCCGAGAAACGAATCGAAAAATAATCATAACGCTCTTACAGATGGTGGTGCCGCGTCATCTAGTGCTTCATCTAATGTAACTTCATTGGACAATGAAAGGGAATATTCTAGCCCATCAAAATATGATTAG 2325 0.4168 MASSDSSCSTQLLDGDGVFNVSGIETFMKEVKLAECGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSYEEKEEQFKEQVASLRQRFHHSIAPGGLAGDRRGVVPASGFSFSSQQIWRVIKENKDLDLPAHKVMVATVRCEEIANEKYAAFAANEEWCQLEEAVQSGQITGFGKKLNSLLDVYLSEYDAEAIYFDEGVRSAKQKQLQEKLLQLVQPAFQSALGHVRSGTLDKFKETFDKALKGGEGFSEAANNCIGSCMAQFDKACLDVVIEHANWDASKVREKLQRDIDAHVASVRAEKISELTTTYEEKLKESLSGPVEALLDGANSDTWSSIKNLLRRETESAVSGFSGALSRFDMDEDTRHKMILSIEDYARGVVEGKAREEAGRVLIRMKDRFTMLFSHDSDSMPRVWTGKEDIRAITKTARSASLKLLSVMAAIRLDDNADSIEKTLVVALVDSSNNAVNRSITMVDPLASSNWEQEANKRNNNWLPPPWAIVALVILGFNEFMTLLRNPLYLGVIFVGYLLVKALWMQLDISGEFRNGALPGIISLSSKFIPTIMNLIKRLAEEGQNPANNNPPRNESKNNHNALTDGGAASSSASSNVTSLDNEREYSSPSKYD 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1092 774 CDD GBP 36 239 - -
Lal20g1092 774 Coils Coil 218 238 - -
Lal20g1092 774 Pfam Sey1 three-helix bundle domain 638 723 IPR046758 -
Lal20g1092 774 Pfam Sey1 three-helix bundle domain 323 637 IPR046758 -
Lal20g1092 774 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Lal20g1092 774 MobiDBLite consensus disorder prediction 724 774 - -
Lal20g1092 774 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Lal20g1092 774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 246 IPR027417 -
Lal20g1092 774 Gene3D - 23 245 IPR027417 -
Lal20g1092 774 PANTHER PROTEIN SEY1 635 774 IPR008803 -
Lal20g1092 774 PANTHER PROTEIN SEY1 4 633 IPR008803 -
Lal20g1092 774 Hamap Protein SEY1 [SEY1]. 9 725 IPR008803 -
Lal20g1092 774 MobiDBLite consensus disorder prediction 724 766 - -
Lal20g1092 774 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 4 633 - -
Lal20g1092 774 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 635 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1092 Lal-Chr20 15070174 15078974 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1092 K22698 - gmx:100777656 1304.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1092 20 15070174 15078974 Lal1g1361 1 15438331 15454580 LSH
Lal25g0327 25 2235351 2245431 Lal20g1092 20 15070174 15078974 PCT
Lal20g1092 20 15070174 15078974 Lal25g0327 25 2235351 2245431 PCT