Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0306 ATGGATGGAAATTTAAGCAGAAACAGAAGCATAAGCAGTAATTTAAGCAGAAGCATAAGTAGAAGTTTAAGCAGATCAGGATGGAGAATGGAAGAAGTGTTTGCAAGTGGTAGATATTCAAGAAGAACATCAACTGTTGATGAAGATGAAGAAGCTCTAAAATGGGCTGCTATAGAGAGATTACCAACTTATGATAGGTTGAGAACAAGTATCTTTCAAACTTATGTTGAAGGTACTGATCATGCACAAAGACCTAGAGAAGTTGATGTTAGAAAGTTAGATGGGAATGAAAGGCAACAAATTATTGATAAGATCTTCAAGGTTGCTGAGGAAGATAATGAAAAGTACTTGAACAAGTTCAGAAACAGAATTGAAAGGGTTGGTATCAAACTTCCAACAGTAGAAGTAAGGTTCCATAATTTGAATGTTGAGGCAGATTCCTATGTTGGGAGCAGAGCTTTGCCAACATTACCAAATGTTGCATTGAACATTATTGAATCAGCTATTGGCATATTTGGTATTAGCACTGCTAAGAGAAGAAAGCTCACAATTCTTAAGAATGCTTCTGGCATTATTAAACCTTCAAGGATGGCCCTTTTGCTAGGTCCACCTTCATCAGGGAAAACAACACTTTTGCTAGCATTGGCTGGAAAATTGGACCCTGACTTAAGGGTGAATGGAGAAATCAGCTACAATGGGCATAATCTTAATGAATTTGTCCCTAGAAAAACTTCAGCTTATATTAGTCAAAATGATGTGCATCAAGGAGAAATGACAGTGAAAGAAACTCTCGATTTCTCTGCTAGATGTCAAGGGGTTGGGTCAAGATATGACCTATTAGCTGAGCTAGCTAGAAGGGAAAAACAAGCTGGAATTTTACCAGAAGCAGAAATTGATCTCTTCATGAAGGCTACTGCAATGGAAGGAACAGAAAGTAGTCTTATGACTGATTATACTCTCAAAATATTGGGGCTTGATATTTGCAAAGATACTATTGTGGGTGATGAAATGAATAGAGGTGTATCTGGTGGACAAAAGAAGCGTGTAACTACTGGTGAAATGATTGTTGGGCCAACAAAAACACTTTTCATGGATGAGATATCAACAGGTCTTGATAGTTCCACAACATTTCAGATAGTGAAATGCTTCCAACAAATTGTACACTTAACTCAAGCAACAATATTCATGTCACTGCTCCAACCTGCTCCTGAAACCTTTGATCTATTTGATGATATTTTCTTAATATCTGATGGTCAAATTGTTTATCAAGGCCCACGTGACCATGTTGTTGAGTTCTTTGAGTCTTGTGGCTTTAAATGTCCTGACAGAAAAGGAACAGCTGATTTCTTGCAAGAGGTTACTTCAAGGAAGGACCAAGAGCAATATTGGGCAGACAGAAGCAGACCATACCGTTATATAACAGTGAGTGAGTTTGCAAACATGTTCAAGCAATTTCATGTTGGGAGACAACTTGAGAGTGAACTCTCTGTGCCATTTGACAAGGCAAGGGGACATAAAGCATCTCTTGTTTTCAAGAAGTACACAGGTTCCACTGTGAAACTTTTCCAAGCATGTTGGGACAAGGAGTGGCTTCTTATCAAGAGGAATGCTTTTGTCTATATATTCAAGACAGGTCAAATAGTTGTTATTGGTTTTATAGCAGCAACTGTGTTCCTTAGGACTCAAATGCATACAAGGAATGAGAGTGATGCAGCACTTTATGTTGGTGCAATTTTGTTTACCATGATCATGAACATGTTCAATGGTTTCTCTGAGCTGCCACTCACAATTGCAAGGCTTCCTGTGTTTTACAAGCATAGAGACCACCTTTTCCACCCTCCATGGACCTACACACTCCCCAGTTTCCTTCTAAAGTTGCCCATTTCTGTAATGGAATCTATTGTTTGGACAATTATGACTTACTACTCAATTGGATTTGCACCTGCAGCTGCCACGTTCTTCAAACACTTGTTAGTGGTGTTTCTTGTCCAACAAATGGCAGCAGGGATGTTTAGGCTAATTTCAGGAGTCTGTAGGACAATGATTGTTGCCAACACCGGTGGAGCCCTCATGCTCGTTCTCGTTTTCTTACTTGGAGGCTTCATCCTACAAAAAGATGACATTCCAAATTATTGGATTTGGGGCTATTGGATCTCACCACTGATGTATGCTTTCAATGCCTTTTCTGTGAATGAATTGCTTGCTCCAAGGTGGCAGAAAAGATCTTCAGATGGTCAAAGCACAGTTGGTATAGCTACATTACATAATTTTGGTGCTCATCCTGAAAAAAGATGGTTCTGGATAGGTGCTGGAGCTCTCCTAGGTTTTGTGATTGTTTACAATGTTCTCTTCACACTTGCGCTCATGTTCCTTAACCCTATTGGAAAGAAACAATCAATTATATCTGAAGAAGAAGCAAGGGAAATGGAGGCTGGAGGAGACTCCAGGGAAGAACCCAGATTTTTAAGGCCAGATTCCAACAAAGGGCTACCACGTCAATCATTATCTTCTGCCGATGGAAACAACACGAGAGAAGTGGCGATGCAACGAATGGGCACAAATCCAAGTGAAATAAGAAATGCTGATCCAACCATTGAGCTGGCCGCGGGAGTTGCCCCTAAAAGAGGAATGGTTCTACCATTTCAGCCGCTTGCAATGTCTTTTGATAGTGTCAATTACTATGTGGACATGCCTGGTGAAATGAAAGAACAAGGAGTGAGTGAGGATAAGCTACAATTGCTCAGGGAAGTAACTGGTGCCTTTAGGCCTGGAGTTCTAACAGCTCTAATGGGAGTTAGTGGAGCTGGAAAGACAACATTAATGGATGTCTTAGCAGGAAGAAAGACAGGTGGCTACATTGAAGGAGAAGTTAGAATCTCTGGCTTCCTTAAGAACCAAGAAACCTTTGCTAGAATTTCAGGATATTGTGAACAAACTGACATCCATTCACCCCAAGTTACTGTGAAAGAATCTCTGATTTACTCAGCTTTCCTTAGGTTACCTAAAGAAGTTGGCAATGATGAAAAGTTGAAATTTGTGGAAGAAGTGATGGATTTAGTGGAGCTGAATAATCTCAAGGATGCTATAGTTGGACTTCCAGGTGTTACAGGGTTGTCAACTGAACAGCGAAAGAGGCTAACCATCGCTGTTGAGCTTGTTGCTAATCCTTCAATCATTTTCATGGATGAACCAACTTCGGGTCTTGATGCAAGAGCAGCAGCCATTGTTATGAGGACTGTGAGAAACACTGTTGACACTGGAAGAACAGTTGTCTGCACAATTCATCAGCCTAGCATTGATATATTTGAAGCCTTTGATGAGCTGTTGCTGATGAAGAGAGGAGGGCAAGTGATCTACTCAGGACCTTTAGGAAGGAATTCACACAAGATTGTAGAATATTTTGAGGAAATTCAAGGGGTCCCAAAAATTAAAGATAAGTACAATCCAGCTACATGGATGTTAGAAGTAAGCTCAATAGCAGCTGAAGTTCGACTAGGAATGGATTTTGCTGAATACTACAAGACATCATCTTTGGCTCAGAGAAACAGAGCTCTTGTAAATGAGTTAAGTGTACCACCTCCTGGATCAAAAGACTTGTATTTCCCTAGTCAATTTTCTCAACCAACTATGGGGCAATTTAAATCATGCCTATGGAAGCAGTATCTGACTTATTGGAGGTGTCCAGATTATAACCTTGTTAGATATTTTTTCACCTTGCTTGTTGCTGTTGTGGTAGGGTCTGTATTTTGGAAAGTTGGCACAAAAAGGGATAACTCAAGTAACTTGACCACAATTATAGGAGCATTGTATGGTTCTATCTTTTTTGTTGGTGTTAACAACTGCCAAACTGTTCAACCGGTTGTAGCCATCGAAAGAACAGTATTCTATAGAGAAAGGGCTGCTGGAATGTATTCTGCTTTGCCTTATGCCATCGCGCAGGTCATTATTGAAATACCATATTGCTTTGTGCAAACCATGGTTTTTGCTTTCATAGTGTATGCTATGGTGAGCTTTGAATGGCAAGTAGCAAAGGTCTTTTGGTTCATATTTGTGAGCTTCTTTACCTTCTTATACTTCACTTACTATGGAATGATGACTGTTTCCATTACACCAAACCACCAAGTGGCATCAATCTTTGGAGCTGCATTCTATGGACTCTTCAATCTCTTCTCTGGTTTCTTTATTGCTAGACCAAAAATTCCAAAGTGGTGGGTTTGGTATTACTGGATTTGCCCAATTGCTTGGACAGTGTATGGATTAATAGTGTCACAATATAGAGATGTGTTGGATGAAATTGAAGTGCCTGGTTGGAGTTATAAGCCTAGTATCAAAGATTATATCGACCTGCAATATGGGTTTAAAGCAAACTTCATGGGTCCTGTTGCAGGAGTTTTGGTGGCTTTCCCTGTCTTCTTTGCCTTTGTATTTGCCACTGGCATCAAAATGCTCAATTTCCAGACAAGATAA 4467 0.3998 MDGNLSRNRSISSNLSRSISRSLSRSGWRMEEVFASGRYSRRTSTVDEDEEALKWAAIERLPTYDRLRTSIFQTYVEGTDHAQRPREVDVRKLDGNERQQIIDKIFKVAEEDNEKYLNKFRNRIERVGIKLPTVEVRFHNLNVEADSYVGSRALPTLPNVALNIIESAIGIFGISTAKRRKLTILKNASGIIKPSRMALLLGPPSSGKTTLLLALAGKLDPDLRVNGEISYNGHNLNEFVPRKTSAYISQNDVHQGEMTVKETLDFSARCQGVGSRYDLLAELARREKQAGILPEAEIDLFMKATAMEGTESSLMTDYTLKILGLDICKDTIVGDEMNRGVSGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCFQQIVHLTQATIFMSLLQPAPETFDLFDDIFLISDGQIVYQGPRDHVVEFFESCGFKCPDRKGTADFLQEVTSRKDQEQYWADRSRPYRYITVSEFANMFKQFHVGRQLESELSVPFDKARGHKASLVFKKYTGSTVKLFQACWDKEWLLIKRNAFVYIFKTGQIVVIGFIAATVFLRTQMHTRNESDAALYVGAILFTMIMNMFNGFSELPLTIARLPVFYKHRDHLFHPPWTYTLPSFLLKLPISVMESIVWTIMTYYSIGFAPAAATFFKHLLVVFLVQQMAAGMFRLISGVCRTMIVANTGGALMLVLVFLLGGFILQKDDIPNYWIWGYWISPLMYAFNAFSVNELLAPRWQKRSSDGQSTVGIATLHNFGAHPEKRWFWIGAGALLGFVIVYNVLFTLALMFLNPIGKKQSIISEEEAREMEAGGDSREEPRFLRPDSNKGLPRQSLSSADGNNTREVAMQRMGTNPSEIRNADPTIELAAGVAPKRGMVLPFQPLAMSFDSVNYYVDMPGEMKEQGVSEDKLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGEVRISGFLKNQETFARISGYCEQTDIHSPQVTVKESLIYSAFLRLPKEVGNDEKLKFVEEVMDLVELNNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIVEYFEEIQGVPKIKDKYNPATWMLEVSSIAAEVRLGMDFAEYYKTSSLAQRNRALVNELSVPPPGSKDLYFPSQFSQPTMGQFKSCLWKQYLTYWRCPDYNLVRYFFTLLVAVVVGSVFWKVGTKRDNSSNLTTIIGALYGSIFFVGVNNCQTVQPVVAIERTVFYRERAAGMYSALPYAIAQVIIEIPYCFVQTMVFAFIVYAMVSFEWQVAKVFWFIFVSFFTFLYFTYYGMMTVSITPNHQVASIFGAAFYGLFNLFSGFFIARPKIPKWWVWYYWICPIAWTVYGLIVSQYRDVLDEIEVPGWSYKPSIKDYIDLQYGFKANFMGPVAGVLVAFPVFFAFVFATGIKMLNFQTR 1488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0306 1488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 906 1123 IPR027417 -
Lal25g0306 1488 MobiDBLite consensus disorder prediction 829 843 - -
Lal25g0306 1488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 441 IPR027417 -
Lal25g0306 1488 PANTHER ATP-BINDING CASSETTE TRANSPORTER 19 1488 - -
Lal25g0306 1488 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 886 1139 IPR003439 GO:0005524
Lal25g0306 1488 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 19 1488 - -
Lal25g0306 1488 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 169 442 IPR003439 GO:0005524
Lal25g0306 1488 Pfam ABC-transporter N-terminal 97 160 IPR029481 -
Lal25g0306 1488 Pfam ABC transporter 914 1066 IPR003439 GO:0005524
Lal25g0306 1488 Pfam ABC transporter 185 367 IPR003439 GO:0005524
Lal25g0306 1488 Pfam ABC-2 type transporter 1095 1156 IPR043926 GO:0140359
Lal25g0306 1488 Pfam ABC-2 type transporter 400 453 IPR043926 GO:0140359
Lal25g0306 1488 MobiDBLite consensus disorder prediction 805 825 - -
Lal25g0306 1488 SMART AAA_5 923 1115 IPR003593 -
Lal25g0306 1488 SMART AAA_5 194 426 IPR003593 -
Lal25g0306 1488 Gene3D - 172 476 IPR027417 -
Lal25g0306 1488 CDD ABCG_PDR_domain1 178 424 IPR034001 -
Lal25g0306 1488 CDD ABCG_PDR_domain2 883 1121 IPR034003 -
Lal25g0306 1488 Gene3D - 900 1136 IPR027417 -
Lal25g0306 1488 MobiDBLite consensus disorder prediction 805 843 - -
Lal25g0306 1488 Pfam Plant PDR ABC transporter associated 738 801 IPR013581 -
Lal25g0306 1488 Pfam ABC-2 type transporter 1212 1425 IPR013525 GO:0016020|GO:0140359
Lal25g0306 1488 Pfam ABC-2 type transporter 521 733 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0306 Lal-Chr25 2090688 2101604 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0306 K08711 - gmx:100801386 2432.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0306 25 2090688 2101604 Lal25g0306 25 2090688 2101604 ECH
Lal25g0306 25 2090688 2101604 Lal10g1118 10 17997775 18007306 LSH
Lal25g0306 25 2090688 2101604 Lal8g0262 8 1751941 1761654 LSH
Lal25g0306 25 2090688 2101604 Lal20g1149 20 15924933 15937812 PCT
Lal20g1149 20 15924933 15937812 Lal25g0306 25 2090688 2101604 PCT