Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1149 ATGGATTCTAATTTAAGCAGAAGCATAGGCAGAAGCATAAGCAGATCAAATTGGAGAATGGAAGAAGTATTTGCAAGTGGTAGATATTCTAGAAGATCATCACATGTAGATGAAGATGAAGAAGCTTTAAAATGGGCTGCAATAGAAAAATTACCAACTTATGATAGATTAAGAACAAGTATCATGCAAACTTTTGGAGAAAGTGATGAAATTCATGGAAACAATAAAGCACAACACAAAGAAGTTGATGTTAGAAAACTTGATGTGAATGATAGACAACAAATTATTGACAAGATATTTAAGGTTGCTGAAGAAGATAATGAAAAGTTTCTAAGGAAGTTTAGAAACAGAACTGATAAGGTTGGGATAAGACTTCCAACAGTGGAAGTGAGGTTTCAAAATTTGAGCATTGAGGCTGATTCCTATGTTGGAAGCAGAGCTCTACCAACACTACCAAATGTAGCAATGAACATTCTTGAATCAGGTCTTGGCATGTGTGGAATTAGTACCACCAAGAGAACAAAGCTCACAATTCTTAAGAATGCTTCAGGCATTATTAAACCATCAAGGATGGCCCTTTTACTAGGTCCCCCTTCTTCAGGGAAAACAACCCTTTTGTTGGCATTAGCAGGAAAATTGGACCCAGAATTGAGGGTAAAAGGAGAAATCAGTTACAATGGACACAAGCTTAATGAATTTGTCCCAAGAAAAACTTCAGCATATATTAGCCAAAATGATGTTCATGTTGGAGAAATGACTGTGAAAGAAACCCTTGATTTCTCAGCTAGGTGCCAAGGGGTTGGAACTAGATATGATCTATTAACTGAACTTGCTAGAAGAGAAAAGGAATCTGGAATATTTCCAGAGGCAGAACTTGACCTTTTCATGAAGGCTACTGCAATGGAAGGAGCAGAAAGTAGTCTCTTCACTGATTATACTCTCAAAATATTGGGGCTTGATATTTGCAAAGATACCATAGTAGGTGATGAAATGCACAGAGGTGTATCTGGTGGCCAAAAGAAAAGAGTCACAACAGGAGAAATGATTGTTGGGCCCACAAAAACATTATTCATGGATGAAATATCAACAGGTCTTGATAGTTCAACAACATTTCAAATAGTGAAATGTTTACAACAAATTGTACATCTCACTGAAGGAACTATTTTAATGTCACTTCTTCAACCTGCTCCTGAAACTTTTAATCTATTTGATGACATCATCCTTATAGCTGAGGGACAAATTGTGTACCAAGGCCCACGTCAGCATATTGTTGAATTTTTTGACTCTTGTGGGTTTTCTTGCCCTCAAAGAAAGGGTATTGCTGATTTCTTACAAGAGGTTACCTCAAAGAAGGACCAGGAACAATATTGGGGAGACAAAAACAAAGAATATAGATATGTTACAGTGACAGAGTTTTCAAACAAGTTCAAGAGATTCCATGTTGGAATGCAACTTGAGAATGATTTATCTGTTCCATTTGACAAATCAAATGCACACAAAGCAGCACTTGTTTACAAGACATATTCAGTGACAAAAATGGATCTTCTTAAAGCATGTTGGGACAAAGAATGGTTATTGATTAAGAGAAACTCATTTGTCTATATATTCAAAACAGTGCAAATTTGCATCATTGCTATCATAGCTGCTACTGTGTTTTTGAGGACTGAAATGCACCAAGATAGTGAAGATAATGCTTCTCTTTATATTGGTGCAATTTTGTTCTCAATGATAATGAACATGTTCAATGGTTTTGCTGAGTTAGCACTCACTATTGGAAGACTTCCTGTGTTTTATAAGCATAGGGATCATCTTTTTCACCCTGTTTGGACTTATACTCTTCCCAATTTCCTTTTGAGGATTCCTATTTCTATTTTTGAGTCTCTTGTTTGGATGCTTGTTACTTACTACACAATAGGATTTGCACCTGAAGCCAGCAGGTTCTTCAAGCAACTTTTGTTGGTATTTCTTATCCAACAAATGGCAGCTGGAATGTTTAGGGTAATTTCTGGTGTCTGTAGGACAATGATTATTGCTAACACTGGTGGAGCCCTTATGCTCCTTCTTGTTTTCCTACTTGGAGGTTTCATCCTTCCCAAACGTGCAATTCCTGATTGGTGGGTATGGGCTTATTGGGTTTCACCACTGTCTTATGCTTTCAATGCATTGTCTGTGAATGAAATGTATGCTCCAAGGTGGATGCATGCAAATACTTCTTCTGATGGAACTACTACATTGGGTCTTGCTGTGTTAAGGAACTTTGATGTTTATGCTAAAAGAGATTGGTATTGGATAGGTGCTGCAGCTCTTCTTGGTTTCACAATTTTGTACAACGTTCTCTTCACGCTCGCGCTTATGTACCTTAATCCTTTTGGAAAGAAACAAGCAAATCTATCTGAAGAAGATGCAAATGAATTGGAGGCTGAAGGAGACTTCGATGAAGCACCTAGAATCGTAAGGCCACCTGCACCGAACAATGAATCAGCGCTTCGATCATTATCTACTGCCGATGGAAATAAATCAAGAGAAGTGGCAATGCAGAGAATGAGCAGCCAAGCTAATCCCGGTGGAGTAAGAAATGCTGATTCAACACTCGATTCAGCCACTGGAGTCGCCCCGAAAAAAGGAATGGTTTTACCCTTTCAACCGCTTGCGATGTCCTTTGATACTGTTAACTACTTTGTGGACATGCCTGCAGAAATGAGAGAGCAAGGAGTAACAGAAGATAGGCTACAACTACTTAGGGGAGTAACTAGTGCCTTCAGGCCTGGAGTTCTAACGGCACTAATGGGAGTTAGTGGAGCTGGGAAGACAACTTTGATGGATGTTTTAGCCGGAAGAAAGACCGGTGGCTACATCGAAGGAGATATTAAAATATCCGGATACCCTAAGAACCAAGAAACCTTTGCAAGGGTTTCTGGTTATTGTGAACAAACTGATATTCATTCTCCACAAGTTACTATCAGAGAATCTTTGCTTTATTCTGCGTTCCTTCGGTTACCTAAAGAAGTTAGTAAGGAGGAAAAGATACAATTTGTGGACCAAGTTATGGACTTGGTAGAACTGGATAATCTTAAGGATGCTATTGTGGGGCTTCCGGGAGTTACAGGGTTGTCAACTGAGCAGCGAAAGAGACTGACAATCGCTGTCGAACTTGTTGCTAATCCTTCAATCATTTTCATGGATGAACCAACTTCAGGTCTAGATGCAAGAGCAGCAGCTATTGTTATGAGAACTGTGAGAAACACCGTCGACACCGGAAGAACAGTTGTCTGCACAATTCACCAGCCTAGCATTGATATCTTCGAAGCCTTCGACGAGCTCCTATTGATGAAAAGAGGAGGGCAAGTAATATACTCAGGACCACTAGGCCAGAATTCCCACAAGATTATTGAATACTTCGAGGCAATTCCAGGGGTCCCTAAAATCAAGGAAATGTACAACCCAGCAACATGGATGCTAGAAGTAAGCTCCATAGCAGCCGAAGTTCGGCTCGGAATGGACTTCGCTGAATACTACAAATCTTCTGCTTTGTTTCAGCGAAACAAAGATCTCGTAAAGGAGTTAAGCACACCGCCACCGGGAGCACAAGATCTGTATTTCCCTACTAAGTACTCTCAACCAACTTTCGGGCAATTCAAATCCTGTCTATGGAAGCAGTGGTTGACATACTGGAGGAGTCCGGATTATAACCTCGTGAGATACTTCTTTACCTTGGCTTGTGCTCTCATGATAGGAACAGTATTCTGGAGAATCGGCAGACACAGGGAGAGCTCAACTGACTTGACCATGGTTATAGGAGCAATGTATGCTGCTGTTATTTTTGTCGGAATCAACAACTGCCAAACTGTTCAACCGATAGTTGCCGTTGAAAGAACGGTTTTCTATAGAGAAAGGGCTGCTGGAATGTATGCTCCTTTGCCTTATGCCATTGCACAGGTTTTTACTGAAATACCATATGTGTTCTTCCAAACTGTATATTACTCACTCATAGTGTATGCTATGGTGAGCTTTGAATGGAAAGTGGAAAAGTTCTTTTGGTTCTTCTTTGTCAGTTTCTTCTCCTTCTTGTACTTTACATATTACGGAATGATGACGGTTTCCATAACACCAAATCATCAAGTAGCTTCAATCTTTGCAGCTGCATTTTATGGACTATTCAATCTCTTCTCTGGTTTCTTCATTCCAAGACCAAAAATTCCTAAATGGTGGGTCTGGTATTACTGGATTTGCCCCGTAGCGTGGACCGTGTATGGATTAATCGTCTCGCAATATAGAGATATCGATGATCCGATATTTGTGCCCGGGAATCCTCGGAATTTCACTGTCAAAGAATACATTGAAGACCATTATGGTTTCAAATCAGACTTCATGGGACCAGTTGCTGGAGTTTTGGTAGCTTTTACTGTCTTTTTTGCCTTTGTGTTTTCCTTCTGCATCAAGGCACTGAACTTCCAAACAAGATAA 4464 0.3985 MDSNLSRSIGRSISRSNWRMEEVFASGRYSRRSSHVDEDEEALKWAAIEKLPTYDRLRTSIMQTFGESDEIHGNNKAQHKEVDVRKLDVNDRQQIIDKIFKVAEEDNEKFLRKFRNRTDKVGIRLPTVEVRFQNLSIEADSYVGSRALPTLPNVAMNILESGLGMCGISTTKRTKLTILKNASGIIKPSRMALLLGPPSSGKTTLLLALAGKLDPELRVKGEISYNGHKLNEFVPRKTSAYISQNDVHVGEMTVKETLDFSARCQGVGTRYDLLTELARREKESGIFPEAELDLFMKATAMEGAESSLFTDYTLKILGLDICKDTIVGDEMHRGVSGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEGTILMSLLQPAPETFNLFDDIILIAEGQIVYQGPRQHIVEFFDSCGFSCPQRKGIADFLQEVTSKKDQEQYWGDKNKEYRYVTVTEFSNKFKRFHVGMQLENDLSVPFDKSNAHKAALVYKTYSVTKMDLLKACWDKEWLLIKRNSFVYIFKTVQICIIAIIAATVFLRTEMHQDSEDNASLYIGAILFSMIMNMFNGFAELALTIGRLPVFYKHRDHLFHPVWTYTLPNFLLRIPISIFESLVWMLVTYYTIGFAPEASRFFKQLLLVFLIQQMAAGMFRVISGVCRTMIIANTGGALMLLLVFLLGGFILPKRAIPDWWVWAYWVSPLSYAFNALSVNEMYAPRWMHANTSSDGTTTLGLAVLRNFDVYAKRDWYWIGAAALLGFTILYNVLFTLALMYLNPFGKKQANLSEEDANELEAEGDFDEAPRIVRPPAPNNESALRSLSTADGNKSREVAMQRMSSQANPGGVRNADSTLDSATGVAPKKGMVLPFQPLAMSFDTVNYFVDMPAEMREQGVTEDRLQLLRGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQTDIHSPQVTIRESLLYSAFLRLPKEVSKEEKIQFVDQVMDLVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGQNSHKIIEYFEAIPGVPKIKEMYNPATWMLEVSSIAAEVRLGMDFAEYYKSSALFQRNKDLVKELSTPPPGAQDLYFPTKYSQPTFGQFKSCLWKQWLTYWRSPDYNLVRYFFTLACALMIGTVFWRIGRHRESSTDLTMVIGAMYAAVIFVGINNCQTVQPIVAVERTVFYRERAAGMYAPLPYAIAQVFTEIPYVFFQTVYYSLIVYAMVSFEWKVEKFFWFFFVSFFSFLYFTYYGMMTVSITPNHQVASIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYRDIDDPIFVPGNPRNFTVKEYIEDHYGFKSDFMGPVAGVLVAFTVFFAFVFSFCIKALNFQTR 1487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1149 1487 Pfam Plant PDR ABC transporter associated 732 795 IPR013581 -
Lal20g1149 1487 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 885 1138 IPR003439 GO:0005524
Lal20g1149 1487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 906 1123 IPR027417 -
Lal20g1149 1487 CDD ABCG_PDR_domain1 172 418 IPR034001 -
Lal20g1149 1487 Pfam ABC-2 type transporter 515 726 IPR013525 GO:0016020|GO:0140359
Lal20g1149 1487 Pfam ABC-2 type transporter 1211 1424 IPR013525 GO:0016020|GO:0140359
Lal20g1149 1487 Pfam ABC transporter 179 361 IPR003439 GO:0005524
Lal20g1149 1487 Pfam ABC transporter 914 1065 IPR003439 GO:0005524
Lal20g1149 1487 PANTHER ATP-BINDING CASSETTE TRANSPORTER 9 1487 - -
Lal20g1149 1487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 435 IPR027417 -
Lal20g1149 1487 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 163 436 IPR003439 GO:0005524
Lal20g1149 1487 CDD ABCG_PDR_domain2 882 1120 IPR034003 -
Lal20g1149 1487 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 9 1487 - -
Lal20g1149 1487 SMART AAA_5 922 1114 IPR003593 -
Lal20g1149 1487 SMART AAA_5 188 420 IPR003593 -
Lal20g1149 1487 MobiDBLite consensus disorder prediction 801 836 - -
Lal20g1149 1487 Pfam ABC-transporter N-terminal 88 154 IPR029481 -
Lal20g1149 1487 Gene3D - 899 1134 IPR027417 -
Lal20g1149 1487 Pfam ABC-2 type transporter 1094 1153 IPR043926 GO:0140359
Lal20g1149 1487 Pfam ABC-2 type transporter 394 446 IPR043926 GO:0140359
Lal20g1149 1487 Gene3D - 166 481 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1149 Lal-Chr20 15924933 15937812 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1149 K08711 - gmx:100806025 2615.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1149 20 15924933 15937812 Lal20g1149 20 15924933 15937812 ECH
Lal25g0306 25 2090688 2101604 Lal20g1149 20 15924933 15937812 PCT
Lal10g1118 10 17997775 18007306 Lal20g1149 20 15924933 15937812 PCT
Lal8g0262 8 1751941 1761654 Lal20g1149 20 15924933 15937812 PCT
Lal20g1149 20 15924933 15937812 Lal25g0306 25 2090688 2101604 PCT
Lal20g1149 20 15924933 15937812 Lal10g1118 10 17997775 18007306 PCT
Lal20g1149 20 15924933 15937812 Lal8g0262 8 1751941 1761654 PCT