Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0245 ATGGTTCTTTTTGCTTTGTTCTGTAGGATTATAACTCATGCTCATGCTGTCATGGAGGTTAATCATATTGTTGCTCCTCTACCCGATTCAAAAGCACAGTCGAATAGGCGACGGAGAAAGAAGTCTATTGTCTGGGAACACTTCACCCTGAAAACTTTGAGCCCTAGATGTTCCAAGGCTTACTGCCAACAGTGTGGAAAAGAATTTGCTTATATAACAGATTCGAAACAAATTGGCACCAGCCATCTCAAGAGACACATTTCTTTGGGAATCTGTGAGAAAAATCAACCCAAAAATGGTTCGTCAGGAGGAGATGATGTTGCTCTCTATCCGCCAAAGAAACGAGCAAGAGCAGCGCCTTGTGTTGCAAATTTCTCATTTGATCAGGAATTTTGCAACAATAAGATTGCTAAAATGATCATTTTACATGATTATCCACTTCATATTGTGGAACACCATGGCTTCATAAATTTCGTGCGGACACTCCAGCCGCAGTTTAATCCGCTAAGCTTTAATGCTGTCAAAGGGGATTGTGTTGCCATGTACCTCAGAGAAAAGCAAAATCTGTTGAATCTTATCAACGAGATTCCTGGACGAGTCAACCTCACATTGGACTTCTGGACTTCAGATCAGACATTGGCCTATGTTTTTCTACGAGGACACTTCATTGACGGTGATTGGAACTTACATCAGCCCATTCTCAAGGTTATGATGGTGCCATTTCCTGATTCTGACAATTCCTTAAATCAAAATATAGTGTCCTGCCTAAGTAATTGGCATTTGGAGGGTCGAATATTTACCCTTGTACTTGATAAATTCTTCTCGAATGAGACTGTGATAGGAAATCTGAGGGGTCATCTGTCTCTTAAGAACCCTGTGCTCCTCAATGGCCAATTATTAAGCAAGAACTGTTATGCTCGTGTTCTTAGTCGCCTTGCACTAGACGCGCTATTGGCGATGAGAGAATCTGTCAATAAAGTTCGTGAGAGTGTGAGGTATGTGAAATCTTCAAAATATCACGAGAAAAAGTTTTTTGAGCTCAAGCAACAACTTCAAGTCCCTGGTATGGTTGATCTTTTAATTGATGAGCAAAATAAGTGGGACACAATTTATCGCATGATTGTTGCTGCTTGTGAACTAAAGGAAGTCTTTGCTTGCTTTGATGCCTTTGATCCCAATTACAAAACGACCCTGACAATGGAAGAGTGGAAGCAGGTGGAAACTCTCTGCACATATTTGAAGTATTTATATGATGCAGCGAAAATTTTAACTGTCCAACCATGCCCTACTGCAAACATATTTTTTCCTGCGGTGTCAAAACTTCACATGCAGTTGACAAATGCAACAATCAGCCATGATAATTTCTGTAGTAATTTGATTACGCCTTTGCAAGTGAGGTTTGATCAATATTGGAGAGAAAACTGCCTCATCTTGGCAGTTGCTCTGGCCATGGATCCAAGGTATAAAATGAAACTTGTGGAATCCACCTTTGCTAAGATATTTGGTGAGAATGCTGAGCTGTGGATAAGAATGGTCGAGGTTGGTCTTCATGAACTATTCGTTGAATATATCATACAAATGCTTCCTTCATCATCAAAAAATGGTGATAAGTGGAGTGAGTCTATGTTAAAGACCGAGCTGTTAATGCTTTCTTCATCATCAACAAATAGTGATGAAGGGAATGAGGCTATGATAAAGACTGAGCCGTTGATGCTTTCTTCAACAGCAACAAATGGCGTTGATGAAGGGAATGAGGCTATTATAAAGAAGGAGTCATTGATGCTTTCTTCAACAGCAACAAATGATGAAGAGAATGTGATAAAGATTGAGGCATGTCAAGAAGGGTCACTTGATGGTTTTCTTTTTGATGCTGAAGATGAACTTTCTGATATTGAATTATACTTATCTGATGTTACAGGTAACTATCAATTTAATTCAGAATTGAACGAGTATCTGGAAGAATCTTTGGCACCAAATGTACAAGACTTTGATATTCTGAGCTGGTGGAGAATAAATGGATTGAAGTACCCCACTTTATCTAGAATGGCATCTGATATTTTGTCTATACCAGTGTCCACTGTCTCGGCCGAATCTGTTTTTGACACGGAAGGTAGAAAAATGGATAGGTATAGGAGTTCATTAGACCCCAAGACTCTTGAGGCTCTTATTTGTACTAAGGATTGGTTCCAACATGAATCATTACCTACTGACTTTCCAAATGGATCTTGTCATTCTAGGGATAGATTGTCAAGTTGTAGCTTTTAG 2265 0.3947 MVLFALFCRIITHAHAVMEVNHIVAPLPDSKAQSNRRRRKKSIVWEHFTLKTLSPRCSKAYCQQCGKEFAYITDSKQIGTSHLKRHISLGICEKNQPKNGSSGGDDVALYPPKKRARAAPCVANFSFDQEFCNNKIAKMIILHDYPLHIVEHHGFINFVRTLQPQFNPLSFNAVKGDCVAMYLREKQNLLNLINEIPGRVNLTLDFWTSDQTLAYVFLRGHFIDGDWNLHQPILKVMMVPFPDSDNSLNQNIVSCLSNWHLEGRIFTLVLDKFFSNETVIGNLRGHLSLKNPVLLNGQLLSKNCYARVLSRLALDALLAMRESVNKVRESVRYVKSSKYHEKKFFELKQQLQVPGMVDLLIDEQNKWDTIYRMIVAACELKEVFACFDAFDPNYKTTLTMEEWKQVETLCTYLKYLYDAAKILTVQPCPTANIFFPAVSKLHMQLTNATISHDNFCSNLITPLQVRFDQYWRENCLILAVALAMDPRYKMKLVESTFAKIFGENAELWIRMVEVGLHELFVEYIIQMLPSSSKNGDKWSESMLKTELLMLSSSSTNSDEGNEAMIKTEPLMLSSTATNGVDEGNEAIIKKESLMLSSTATNDEENVIKIEACQEGSLDGFLFDAEDELSDIELYLSDVTGNYQFNSELNEYLEESLAPNVQDFDILSWWRINGLKYPTLSRMASDILSIPVSTVSAESVFDTEGRKMDRYRSSLDPKTLEALICTKDWFQHESLPTDFPNGSCHSRDRLSSCSF 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0245 754 SMART bed5 39 95 - -
Lal25g0245 754 ProSiteProfiles Zinc finger BED-type profile. 39 99 IPR003656 GO:0003677
Lal25g0245 754 PANTHER BED FINGER-RELATED 27 735 IPR045259 -
Lal25g0245 754 SUPERFAMILY beta-beta-alpha zinc fingers 42 88 IPR036236 -
Lal25g0245 754 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 27 735 - -
Lal25g0245 754 Pfam Domain of unknown function (DUF4413) 427 523 IPR025525 GO:0003677
Lal25g0245 754 Pfam hAT family C-terminal dimerisation region 647 729 IPR008906 GO:0046983
Lal25g0245 754 SUPERFAMILY Ribonuclease H-like 194 730 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0245 Lal-Chr25 1696511 1698775 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0245 - - lang:109351164 1411.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0245 25 1696511 1698775 Lal25g0245 25 1696511 1698775 ECH
Lal25g0245 25 1696511 1698775 Lal10g1182 10 18339481 18341604 LSH
Lal25g0245 25 1696511 1698775 Lal20g1224 20 16727312 16732841 PCT
Lal20g1224 20 16727312 16732841 Lal25g0245 25 1696511 1698775 PCT