Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1224 ATGTATAAGATTCTGCTTGCTCTCATGGAGTTTGATACGCATGTTACCACAGTTAATAACAATGACAAACCTGAGTCTGGAACATTTCCCAATAAGCGTCAGAGAAAAAAGTCTATGGTGTGGGAATACTTCACAGTGCAAAGTGTTGGAGCTGGTATTACCAGGGCTTATTGCAAACAGTGCAAGAAATCGTTTGCTTATATCAGTGGTTCAAAGCTATCTGGAACTAGCCATTTGAAAAGACACATTACCTTGGGAATCTGTCAAGTACTTCGTCAGAAAAATGAACAAAGCTTATATTGTAATACTGATGCTTCTCGAGATAGTGCTAATCGACCAAAGAAACGGACGAGAGCAGCATCTGAGTATCCTGGTAATGGTAGCTTATTTGATCAGGAGCGTTGCAACCATGACATTGCTAAAATGATAATTTTACACGATTATCCACTTCATATGGTGGAGCAGCAGGGTTTCATTAATTTTGTTCGGAGTCTTCAACCTCAGTTCAATCCTTTACATTTAAGTTCTGTTGAAGCAAATTGTGTTTCTATGTTCCATAGAAAGAAGCTAAACATGTTGAATCTTATCAAGGGTATTCCTGCACAAGTCAACCTCTCGTTGGACTTATGTACTTCAAACCAGGCAACGCGCTATGTTTTTGTTCGAGGACACTTCATTGATGGTGATTGGAACATGCATCATCCTATTCTCAAGGTTATCACAGTACCGTTTTCTGATTGTGATGATTCCTTAACGCAAGGTGTAGTGACCTGCTTATCTGATTGGCATTTGGATGGTCGATTGTTCACCCTTGCATTTGATAAATCCTTCTCAAGTGAGACTATGATTGGAAATCTGAGAGGTCTTCTTTCTTTCAAGAGCCCTTTGATCCTCAATGGTCAGTTATTAAACCAGAATTGTTATGCTCGTGTTCTTAGTCGCCTTGCAGTAGACACATTATGTTCATTGAGAGAAACTATTGGCAAAGTGCGTGAGAGTGTGAAGTTTGTAAATTCTTCAGATTCTCATAAAAATAAGTTTTTTGAGCTGAAGCAGCAACTACAAGTCCCCAGCATGGTGGACCTTTTGATTGATGATCAGAGTAAATGGAACACAACTTACCATATGCTTGTTGCTGCCTGTGAGTTAAAAGAAGTCTTTACATGCTTTGATGCTTTTGACCCTGATTACAAAACGATTATAACAATGGGTGATTGGAAGAGGGTTCAAACTCTCTGCACATATTTGAAGTTTTTGTATGATGCAGCTAACATTTTAACTGACAAACCATATCCGACTGCAAACGTATTTTTTTGCGAAGTGTCGAAACTTCAAGAGGAGATGACTCATGCTGCGTTCACTGATGATCCTTTCCTTAGTAGTTTGATTATGCCGTTATATGAGAAGTTTGATCAGTATTGGAGAGAAAGCTGTCTAATTCTGGCAATCGCTGTAGCTTTGGATCCGAGGCATAAAATGAAGCTTGTTGAATTTACCTTTGCTAAGATATTTGTTGAGGATGCTGAGTCATGGATAAGAATAGTTGAAGATAGGCTTCGTGAACTATTCATCGAATATAACACCCAAATGCTTCCTTTTGCAGCAACAGATGGTGATGAATTTTTTCTAAAGACAGAGCCATATGAAGAAGAGTCGTGTGATAATTCTATATTTTATGGTGAAGATGTACTTTCTGACTATGAAATTTTGATATCCGATTTAAAGTCAGAATTGGATGAGTATCTGGAAGCGCCATTGCTGCCTATGGTACAGGAATTTGATATTTTGAGTTGGTGGAAATTGAATGGATTCAAGTATCCAACATTGTCTCGAATTGCATCTGATATTTTATCTATACCGGTATCCACTCTTTTTGGAGATTCAGTATTTGACACAAAAATTAGAAAAATGGATAGCTACAAAAGTTCATTAAGCTCCTCGACTCTTGAGGCCCTTATCTGTACTAAGGATTGGTTCCAATATGAATCCTTACCTATAGATGTTACAAATGCACTTGTTAAACTGGAATTTTAA 2034 0.3791 MYKILLALMEFDTHVTTVNNNDKPESGTFPNKRQRKKSMVWEYFTVQSVGAGITRAYCKQCKKSFAYISGSKLSGTSHLKRHITLGICQVLRQKNEQSLYCNTDASRDSANRPKKRTRAASEYPGNGSLFDQERCNHDIAKMIILHDYPLHMVEQQGFINFVRSLQPQFNPLHLSSVEANCVSMFHRKKLNMLNLIKGIPAQVNLSLDLCTSNQATRYVFVRGHFIDGDWNMHHPILKVITVPFSDCDDSLTQGVVTCLSDWHLDGRLFTLAFDKSFSSETMIGNLRGLLSFKSPLILNGQLLNQNCYARVLSRLAVDTLCSLRETIGKVRESVKFVNSSDSHKNKFFELKQQLQVPSMVDLLIDDQSKWNTTYHMLVAACELKEVFTCFDAFDPDYKTIITMGDWKRVQTLCTYLKFLYDAANILTDKPYPTANVFFCEVSKLQEEMTHAAFTDDPFLSSLIMPLYEKFDQYWRESCLILAIAVALDPRHKMKLVEFTFAKIFVEDAESWIRIVEDRLRELFIEYNTQMLPFAATDGDEFFLKTEPYEEESCDNSIFYGEDVLSDYEILISDLKSELDEYLEAPLLPMVQEFDILSWWKLNGFKYPTLSRIASDILSIPVSTLFGDSVFDTKIRKMDSYKSSLSSSTLEALICTKDWFQYESLPIDVTNALVKLEF 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1224 677 SUPERFAMILY beta-beta-alpha zinc fingers 38 91 IPR036236 -
Lal20g1224 677 Coils Coil 564 584 - -
Lal20g1224 677 PANTHER BED FINGER-RELATED 25 665 IPR045259 -
Lal20g1224 677 Pfam Domain of unknown function (DUF4413) 429 526 IPR025525 GO:0003677
Lal20g1224 677 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 25 665 - -
Lal20g1224 677 Pfam hAT family C-terminal dimerisation region 577 659 IPR008906 GO:0046983
Lal20g1224 677 ProSiteProfiles Zinc finger BED-type profile. 35 95 IPR003656 GO:0003677
Lal20g1224 677 SUPERFAMILY Ribonuclease H-like 200 660 IPR012337 -
Lal20g1224 677 MobiDBLite consensus disorder prediction 103 124 - -
Lal20g1224 677 SMART bed5 35 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1224 Lal-Chr20 16727312 16732841 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1224 - - gmx:106799409 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1224 20 16727312 16732841 Lal20g1224 20 16727312 16732841 ECH
Lal25g0245 25 1696511 1698775 Lal20g1224 20 16727312 16732841 PCT
Lal10g1182 10 18339481 18341604 Lal20g1224 20 16727312 16732841 PCT
Lal20g1224 20 16727312 16732841 Lal25g0245 25 1696511 1698775 PCT
Lal20g1224 20 16727312 16732841 Lal10g1182 10 18339481 18341604 PCT