Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0233 ATGTGTTTCATCTTGCTATCTATGCTTTATATATGGAGTCATTGCATGCAATGGCAAAAATGCAAAACAAAAATTCATCTAATACACTTGAGCCATCATTGTACGTATACTATGCCCATGATGGAGCTGAGAAATGTTAGTGATTTTTTGAGGGGAAAGACCATTTTAGTTACCGGAGCAACAGGATTCCTAGCCAAGGTTTTTGTGGAGAAGATACTAAGGGTTCAACCTGACATAAAAAAGTTATACCTTCTTGTAAGAGCATCAGATTCTTATTTGGCTACCCAACGTTTGCACGATGAGGTCTTTAAGAAGGACTTGTTCAGGGTAGTACAAGATAAGTGGGGTGCAGATTTTAGTTCCTTCATATCTAACAAAGTGGTAGCTGTTGCTGGAGATGTGTCACGTGACATGTTTGGTCTTATAGACGTAAAACTTAGTGAAGAAATGTTGAAGGAGATCAATATTATTGTAAATAGTGCAGCCACTACCAATCTTGATGAAAGATTTGATGTTGCAATGGATACCAATACGATGGGAGCTTTTAATCTTTTGAATTTTGCTAAAAGATGTCGAAATATAGAAATTATTCTTCATGTATCCACTGCATATGTGTGTGGGCCGGGAGAAGGACTTGTAGGTGAGGAACCTATCCAAATGGGTCAGACACTAAATAAGTCTCCAATATTATTAGACATCAACTTAGAAAAACAGTTGATTAAGGACAAACTGAGTGAACTTCGTGCACAGAATGCCAATGAAGAAACAATCACCAAAACAATGAAAATGTTTGGAATGATAAGGGCAAATTTGCATGGATGGCAAGACACATATTCATTTACAAAAGCAATGGGAGAAATGATAATGGGAAATATGAAAGATAATATAGATTTGATTATCACACGTCCTACTATGATAGTTGGTACTCACTCTGAACCCTTTCCTGGTTGGATTGAAGATGTCAGAACTATAGACTTTTTGATTGCTGCATATTGCAAAGGAACATTAACAAGCTTTGTTGGTCATTCAGAGATAGTTTTAGATACGATACCTGTAGACATGGTGGTAAATTCTATGATCATAGCACTTCTAGCTCATTCTAAGAATCTTTTCAAAAATTGGATCTATCATAGTGCTTCTTCCCTAAGAAATCCATTCAAGTTTTCTGATCTTCAAGATATTATGTATAGTTATTTCACAAAAAATCCTTGGGTGGATCAATATGGAAAGCGAGTAGTTGTCACACAAAAATTAACATTATACTCTACTAGTACGGATGAACTTCGCTTAAACAAGGGATCAAAGTTGGAGAGAATAAGTGATTTGTACAAACCATATTTTCTCTTTCAGGGCATCTTTGATGACCAAAATGCAGAAAAGTTAAGAATAGCTACAAAGGGAGTTCCTGGTATGAATGAGGAGTTTAACTTTGATCCTAAGGCTATTAACTGGAAGGACTACATGATGAATATCCATTTTCCTGGTCTAGTCAAGTACTCTATACGTAGTAACATATAA 1518 0.3584 MCFILLSMLYIWSHCMQWQKCKTKIHLIHLSHHCTYTMPMMELRNVSDFLRGKTILVTGATGFLAKVFVEKILRVQPDIKKLYLLVRASDSYLATQRLHDEVFKKDLFRVVQDKWGADFSSFISNKVVAVAGDVSRDMFGLIDVKLSEEMLKEINIIVNSAATTNLDERFDVAMDTNTMGAFNLLNFAKRCRNIEIILHVSTAYVCGPGEGLVGEEPIQMGQTLNKSPILLDINLEKQLIKDKLSELRAQNANEETITKTMKMFGMIRANLHGWQDTYSFTKAMGEMIMGNMKDNIDLIITRPTMIVGTHSEPFPGWIEDVRTIDFLIAAYCKGTLTSFVGHSEIVLDTIPVDMVVNSMIIALLAHSKNLFKNWIYHSASSLRNPFKFSDLQDIMYSYFTKNPWVDQYGKRVVVTQKLTLYSTSTDELRLNKGSKLERISDLYKPYFLFQGIFDDQNAEKLRIATKGVPGMNEEFNFDPKAINWKDYMMNIHFPGLVKYSIRSNI 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0233 505 Coils Coil 230 250 - -
Lal25g0233 505 Gene3D - 42 435 - -
Lal25g0233 505 CDD FAR_C 428 499 IPR033640 -
Lal25g0233 505 PANTHER FATTY ACYL-COA REDUCTASE 46 503 - -
Lal25g0233 505 CDD FAR-N_SDR_e 53 403 - -
Lal25g0233 505 Pfam Male sterility protein 432 501 IPR033640 -
Lal25g0233 505 Pfam Male sterility protein 57 359 IPR013120 -
Lal25g0233 505 PANTHER MALE STERILITY PROTEIN 2-RELATED 46 503 IPR026055 GO:0080019
Lal25g0233 505 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 368 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0233 Lal-Chr25 1603469 1608233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0233 49 453 Acyl Lipid Metabolism Gene Families AT3G44560 48.055 1.73e-132 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0233 K13356 - gmx:100793736 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0233 25 1603469 1608233 Lal25g0233 25 1603469 1608233 ECH
Lal25g0233 25 1603469 1608233 Lal1g0423 1 2633119 2640051 PCT
Lal25g0233 25 1603469 1608233 Lal9g0321 9 2112307 2118264 PCT
Lal1g0423 1 2633119 2640051 Lal25g0233 25 1603469 1608233 PCT
Lal9g0321 9 2112307 2118264 Lal25g0233 25 1603469 1608233 PCT