Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0182 ATGAGAACCTTTCTTTTCCTTTCTCTCACAACCCTTCTTCTCTTCTCTTCCTTCTCTCTCATTTCCTCCACCACCGAAGACCAAGACGAACTTGAAGATCTCACCTTCCTCCAAGATTCCGATCACACTTCCGATTCCGACCACCACCACTTCGATGACAACGACGCCGATCTCGACGACTTTTCCTCCTCCGTATCCGATCACGAAATCGATGATAAAAACGTTGTCGTTTTGAATGATAAGAACTTCAGTGACGTCATCAACAACAACCGTTTCGTGTTGGTTGAATTCTACGCGCCTTGGTGCGGTCACTGTAAGGCATTAGCTCCTGAATATGCAGAAGCTGCTACTGAATTGAAGGACAAAGGTGTAATTTTAGCAAAGGTTGATGCTTCTGAGGAAAATGAATTGGCACAGAAGTATGATATTCAAGGATTTCCTACTCTCTATTTCTTCATCGATGGAATTCATAAACTCTACAATGGACATAGGAACAAAGATGCTATAGTGAGTTGGATTAAGAAGAAGACAGGACCTGGTATTCACAACATAACTAGTTTGGGTGATGCTGAAGCCATTTTGACCTCTCAATCCAAACTTGTTTTGGCTTTCCTCAACTCTTTAGTTGGCCCTGAGAGTAGTGAGGTAGCTGCCGCTTCAAGGTTTGAGGATGATGTCAATTTTTATCAAACTGTGAGTCCTGATGTGGCAAAGCTTTTCCATATTGATCCCGATGTTAAACGCCCAGCTTTGATCCTGATCAAGAAAGAGGACGAAAAACTCAACTATTTTGATGGCCATTTTGAAAAGTCTGAAATAGCAAACTTTGTAACCGCCAACAAGCTTCCCCTGGTAACAGTTTTCACAAGAGAAGGTGCTCCAGCAATATTTGAAAATCCAATCAAGAAACAGTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCAGTATTTCGAGAAGCAGCTAAATCTTTCAAGGGGAAGCTGATCTTTATATATGTGGAATTGGACAATGAAGATTTTGGAAAGCCAGTTGCAGAGTACTTTGGTATCAATGGGGATGCTCCAAAAGTACTAGCATACACTGGAAATGAAGATGGAAAAAAATTTGTGCTTGATGGCGAGGTGACTGTTGACAACATAAAGGTATTTGGGGAAAATTTCTTTGAAGACAAGTTAAAGCCTTTCTTCAAGTCAGATCCAGTTCCTGAAAGTAATGAAGGTGACGTGAAAATAGTTGTTGGGAATAACTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTCGAGATTTATGCTCCATGGTGTGGACATTGCCAAGCACTGGAACCAATATATGACAAGCTTGCAAAACATCTTCGCAGTATTGAGTCTATTGTGATAGCGAAAATGGATGGAACAACAAATGAGCACCCTAGGGCAAAGCCTGATGGATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCGATTACTGTTGATACAGATCGTACAGTGGTAGCCTTTTATAAGTTCCTCAAGAAAAATGCATCAATCCCATTCAAGCTCAAGAAACCAACCTCAACTTCTAAAACCCCAAGTTCTGATGCCAAGGAGAGTGCTGATGCTAAGGAGAGCCAGAGCAGCAATGTTGATGTGAAGGACGAATTATGA 1680 0.4149 MRTFLFLSLTTLLLFSSFSLISSTTEDQDELEDLTFLQDSDHTSDSDHHHFDDNDADLDDFSSSVSDHEIDDKNVVVLNDKNFSDVINNNRFVLVEFYAPWCGHCKALAPEYAEAATELKDKGVILAKVDASEENELAQKYDIQGFPTLYFFIDGIHKLYNGHRNKDAIVSWIKKKTGPGIHNITSLGDAEAILTSQSKLVLAFLNSLVGPESSEVAAASRFEDDVNFYQTVSPDVAKLFHIDPDVKRPALILIKKEDEKLNYFDGHFEKSEIANFVTANKLPLVTVFTREGAPAIFENPIKKQLLLFATSNDSEKLIPVFREAAKSFKGKLIFIYVELDNEDFGKPVAEYFGINGDAPKVLAYTGNEDGKKFVLDGEVTVDNIKVFGENFFEDKLKPFFKSDPVPESNEGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYDKLAKHLRSIESIVIAKMDGTTNEHPRAKPDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFLKKNASIPFKLKKPTSTSKTPSSDAKESADAKESQSSNVDVKDEL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0182 559 CDD PDI_b_family 181 280 - -
Lal25g0182 559 ProSitePatterns Thioredoxin family active site. 433 451 IPR017937 -
Lal25g0182 559 Gene3D Glutaredoxin 407 521 - -
Lal25g0182 559 PANTHER PROTEIN DISULFIDE ISOMERASE 55 539 - -
Lal25g0182 559 PRINTS Thioredoxin family signature 93 101 - -
Lal25g0182 559 PRINTS Thioredoxin family signature 101 110 - -
Lal25g0182 559 PRINTS Thioredoxin family signature 142 153 - -
Lal25g0182 559 SUPERFAMILY Thioredoxin-like 411 520 IPR036249 -
Lal25g0182 559 Gene3D Glutaredoxin 64 176 - -
Lal25g0182 559 Gene3D Glutaredoxin 282 406 - -
Lal25g0182 559 SUPERFAMILY Thioredoxin-like 69 178 IPR036249 -
Lal25g0182 559 SUPERFAMILY Thioredoxin-like 280 410 IPR036249 -
Lal25g0182 559 MobiDBLite consensus disorder prediction 525 559 - -
Lal25g0182 559 CDD PDI_b'_family 292 392 - -
Lal25g0182 559 ProSiteProfiles Thioredoxin domain profile. 56 178 IPR013766 -
Lal25g0182 559 Pfam Thioredoxin 413 498 IPR013766 -
Lal25g0182 559 Pfam Thioredoxin 75 175 IPR013766 -
Lal25g0182 559 ProSitePatterns Thioredoxin family active site. 94 112 IPR017937 -
Lal25g0182 559 SUPERFAMILY Thioredoxin-like 186 291 IPR036249 -
Lal25g0182 559 TIGRFAM pdi_dom: protein disulfide-isomerase domain 78 176 IPR005788 GO:0003756
Lal25g0182 559 CDD PDI_a_PDI_a'_C 413 515 - -
Lal25g0182 559 CDD PDI_a_family 76 173 - -
Lal25g0182 559 ProSiteProfiles Thioredoxin domain profile. 391 520 IPR013766 -
Lal25g0182 559 TIGRFAM ER_PDI_fam: protein disulfide isomerase 74 558 IPR005792 GO:0003756
Lal25g0182 559 MobiDBLite consensus disorder prediction 539 559 - -
Lal25g0182 559 Gene3D Glutaredoxin 177 281 - -
Lal25g0182 559 Pfam Thioredoxin-like domain 217 387 - -
Lal25g0182 559 PANTHER PROTEIN DISULFIDE-ISOMERASE 55 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0182 Lal-Chr25 1177623 1181431 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0182 K09580 - gmx:100170706 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0182 25 1177623 1181431 Lal25g0182 25 1177623 1181431 ECH
Lal25g0182 25 1177623 1181431 Lal8g0143 8 974796 979032 LSH
Lal25g0182 25 1177623 1181431 Lal2g0290 2 1685742 1691403 PCT
Lal2g0290 2 1685742 1691403 Lal25g0182 25 1177623 1181431 PCT