LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal24g0198	ATGGAGCAACCACCTGCAATCACTGAAGCTATTGAATCTTTGTCCCTCTCCCACCCTGAAACTGCTGACTCATCCAATCCAAACTCAAATCATCATTTGAGTTTGGAGCAGAGGTTTCAGACCATAAGGAATATTGGCGAAGAGTGCATTCAAGAAGAAGAACTCCGAAACCTCCTCGCTAAGAAGCCTTATCCTATTTGCTATGATGGATTTGAACCCTCTGGCCGAATGCACATTGCTCAGGGAGTTATGAAGACAATCAATGTGAACAAGCTAACATCTTCTGGTTGCCGTGTCAAAATATGGATTGCCGATTGGTTTGCCAAGCTCAACAATAAAATGGGGGGAGATTTGAAGAAGATTGAGACAGTTGGCCGTTACTTGATTGAGATTTGGAAAGCTGTTGGGATGGATCTGGAAGGAGGAAAAGTTGAGTTTTTGTGGTCATCAAAGGAGATTAATGCGAGAGCTGACGAATACTGGCCTCTTGTGTTGGATATAGCTCAGAAGAACAACCTTAAAAGGATTATCAGGTGTAGCCAAATAATGGGAAGGAGTGAAACAGAAGAATTGACTGCTGCTCAGATATTCTATCCATGCATGCAGTGTGCTGACATATTTTTCCTCAAGGCCGACATCTGCCAATTGGGAATGGATCAGCGAAAAGTGAATGTCCTCGCGAGGGAGTACTGTGATGACATTAAGAGGAAGAACAAACCCATTATCTTGTCACACCACATGTTACCTGGTCTACAGGAAGGGCAAGAAAAGATGTCAAAAAGTGACCCGTTATCTTCCATTTTCATGGAAGATGAGGAGGCTGAAGTGAATCTGAAAATAAAGAAAGCATTTTGCCCGCCAAAGGTTGTAGAAAAGAACCCATGCTTGGAGTACGTTAAGTATCTTATTTTACCTTGGTTTAATGAGTTCAACGTGGAGCGTAGTGCTGGTAATGGTGGGGATAAGACATTCAAAAACTTTGAAGAGCTGGCTGCTGACTATGAAAGTGGGCAATTGCATCCAGCTGATCTTAAATCAGCTTTGTCAAAGTCATTGAATAAAATTTTGGAGTTGATCCAACCCGTGAGAGGAAACGAGAGAGACACCAGAGCTGCTATCCTCATGCTTTGGCTGCTCTGGGTAATGTATCATATTGGTGCTGATAGCATCTTGCTTACCGAGTCACCAAATAACATGCTGATTAAAGACTACAGGCTAATTCTGTTATTTGCCAAACCACCATATACTTTTCAAGTTACCAAATGCATTGAGTTACTTGTAAAATATGGTAGAGGTCCTCTCTATGTTGTTTTTGTTGTTGTTGTTGGCTTCATGGCCAAGCCAGTGTCCATTGAGGTATGGAACCCAAATGGGAAATACAGAGTTGTTAGCACTAAACCAATGCCAGGAACTCGTTGGATTAATCTTCTAGTCCACCAAGATTGTCGTGTTGAAATATGTACCGAGAAGAAAACTATTCTGTCAGTTCAAGACATTATTGCTTTGATTGGTGATAAGTGCGATGGAGTTATAGGACAGTTGACTGAAGAATGGGGAGAAGAGTTGTTCTCTGCCTTGAGCAAAGCTGGAGGCAAAGCTTTCAGTAACATGGCAGTTGGGTACAATAATGTGGATGTCAATGCTGCAAACAAGTATGGTGTTGCTGTTGGAAATACTCCTGGAGTGCTGACTGAGACAACAGCAGAGCTAGCAGCTTCACTGTCTTTATCAGCTGCAAGAAGGATAGTTGAGGCAGATGAGTTCATGAGAGCAGGACTATATGATGGATGGCTACCTCATCTATTTGTTGGAAACCTGCTGAAAGGACAAACGGTTGGCGTTATTGGAGCCGGCCGAATCGGATCAGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTAATTTACTACGATCTCTACCAGGCAACTCGACTAGAAAAGTTTGTTACAGGCATTTTCCTACCCTGCCATTCACCCCTATTTATAAACCATATATATTACTCTGAAGTGATGATCAAGTTCATTCCTATTGCAGCTTATGCTGAATTCTTGAAAGCAAATGGTGAACAACCAGTCACTTGGAAAAGGGCATCAACCATGGATGAGGTCCTCCAGGAAGCAGATCTAATCAGTCTTCATCCTGTCTTGGACAAAACCACTTATCATCTGGTCAACAAGGAAAGACTTGCCAAGATGAAGAAGGAAGCAATTCTTATAAACTGCAGTAGAGGGCCTGTTGTTGATGAAGTTGCACTTGTAGAGCATTTAAGACAGAATCCAATGTTTCGAGTAGGCCTTGATGTCTTTGAGGATGAGCCCTACATGAAACCCGGGCTAGCAGAGTTGAAGAATGCCATTGTGGTACCTCATATTGCATCTGCTTCTAAGTGGACCCGTGAAGGAATGGCCACATTAGCAGCTCTAAATGTGCTGGGAAAAATTAAAGGGTACCCAGTTTGGTTTGATGCCAATAGGGTGGAACAATTTCTTAATGAGAACGTTCCACCTCCAGCTGCAAGCCCAAGCATAGTTAATGCAAAAGCCCTTGGTTTGCCAGTTTCAAAGCTATAG	2577	0.4261	MEQPPAITEAIESLSLSHPETADSSNPNSNHHLSLEQRFQTIRNIGEECIQEEELRNLLAKKPYPICYDGFEPSGRMHIAQGVMKTINVNKLTSSGCRVKIWIADWFAKLNNKMGGDLKKIETVGRYLIEIWKAVGMDLEGGKVEFLWSSKEINARADEYWPLVLDIAQKNNLKRIIRCSQIMGRSETEELTAAQIFYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQEGQEKMSKSDPLSSIFMEDEEAEVNLKIKKAFCPPKVVEKNPCLEYVKYLILPWFNEFNVERSAGNGGDKTFKNFEELAADYESGQLHPADLKSALSKSLNKILELIQPVRGNERDTRAAILMLWLLWVMYHIGADSILLTESPNNMLIKDYRLILLFAKPPYTFQVTKCIELLVKYGRGPLYVVFVVVVGFMAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLVHQDCRVEICTEKKTILSVQDIIALIGDKCDGVIGQLTEEWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSLSAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTGIFLPCHSPLFINHIYYSEVMIKFIPIAAYAEFLKANGEQPVTWKRASTMDEVLQEADLISLHPVLDKTTYHLVNKERLAKMKKEAILINCSRGPVVDEVALVEHLRQNPMFRVGLDVFEDEPYMKPGLAELKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEQFLNENVPPPAASPSIVNAKALGLPVSKL	858

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal24g0198	858	Pfam	tRNA synthetases class I (W and Y)	66	357	IPR002305	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
	Lal24g0198	858	SUPERFAMILY	Formate/glycerate dehydrogenase catalytic domain-like	461	600	-	-
	Lal24g0198	858	SUPERFAMILY	Nucleotidylyl transferase	37	362	-	-
	Lal24g0198	858	Gene3D	HUPs	193	375	IPR014729	-
	Lal24g0198	858	PANTHER	BNAANNG11300D PROTEIN	4	364	-	-
	Lal24g0198	858	PANTHER	TYROSINE-TRNA LIGASE	4	364	-	-
	Lal24g0198	858	ProSitePatterns	D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.	612	640	IPR029752	-
	Lal24g0198	858	Pfam	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	475	819	IPR006139	GO:0016616\|GO:0051287
	Lal24g0198	858	Gene3D	-	562	793	-	-
	Lal24g0198	858	CDD	GDH	460	818	-	-
	Lal24g0198	858	Pfam	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	574	645	IPR006140	GO:0051287
	Lal24g0198	858	Pfam	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	680	794	IPR006140	GO:0051287
	Lal24g0198	858	Gene3D	-	462	818	-	-
	Lal24g0198	858	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	564	795	IPR036291	-
	Lal24g0198	858	Gene3D	HUPs	26	192	IPR014729	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal24g0198	Lal-Chr24	1443548	1452666	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal24g0198	K15893		-	cpap:110818965	696.041

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal12g0265	12	1895584	1899052	Lal24g0198	24	1443548	1452666	LSH
	Lal13g0233	13	1487426	1490694	Lal24g0198	24	1443548	1452666	LSH