Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0233 ATGGCCAAGCCAGTGTCCATTGAGGTATGGAACCCAAATGGGAAATACAGAGTTGTTAGCACAAAACCAATGCCTGGAACTCGTTGGATAAATCTTCTAGTCCACCAAGATTGTCGTGTTGAAATATGTACAGAGAAGAAAACTATTCTGTCAGTTGAAGACATCATTGCTTTGATTGGTGATAAGTGTGATGGAGTTATAGGGCAGTTGACTGAAGACTGGGGAGAAGAGTTGTTCTCTGCCTTGAGTAGAGCAGGAGGAAAAGCTTTCAGTAACATGGCTGTTGGCTACAATAATGTGGATGTCAATGCTGCAAACAAGTATGGTGTTGCTGTTGGAAATACTCCTGGAGTGCTAACTGAGACAACAGCAGAGCTGGCAGCTTCACTGTCTTTAGCAGCTGCGAGAAGGATAGTCGAGGCAGATGAGTTCATGAGGGCTGGATTATATGATGGATGGCTACCTCATCTATTTGTTGGAAACCTGCTGAAAGGACAAACGGTTGGTGTTATTGGAGCTGGCCGTATCGGATCAGCTTATGCAAGAATGATGGTTGAAGGATTCAAGATGAACCTAATTTACTTCGATCTCTACCAGGCTACTCGGCTGGAAAAGTTTCGTATGCCGATGACTTGGAAAAGAGCAGCATCCATGGATGAGGTCCTCCAAGAAGCAGATCTAATTAGTCTTCATCCTATCTTGGATAAAACCACTTATCATCTAGTGAACAAGGAAAGACTCTCCAAGATGAAGAAGGAAGCAATTCTGATAAACTGCAGTAGAGGGCCTGTTGTTGATGAAGTTGCACTTGTGGAGCATTTGAAGCAGAATCCGATGTTTCGAGCAGGACTTGATGTGTTTGAGGATGAGCCCTACATGAAACCTGGGCTTGCAGAGTTGAAGAATGCTGTTGTGGTACCTCACATTGCATCTGCCTCCAAGTGGACCCGTGAGGGAATGGCCACATTAGCAGCTCTAAATGTGCTGGGAAAGATTAAAGGGTATCCAGTTTGGTTTGATGCCAATAAAGTGGAACCATTCCTTAATGAGAATGCTCCACCACCAGCTGCAAGCCCAAGCATTGTTAATGCAAAAGACCTTGGGTTGCCAGTTTCACAGGCATAG 1125 0.4462 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLVHQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQATRLEKFRMPMTWKRAASMDEVLQEADLISLHPILDKTTYHLVNKERLSKMKKEAILINCSRGPVVDEVALVEHLKQNPMFRAGLDVFEDEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANKVEPFLNENAPPPAASPSIVNAKDLGLPVSQA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0233 374 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 28 338 - -
Lal13g0233 374 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 168 196 IPR029752 -
Lal13g0233 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 311 IPR036291 -
Lal13g0233 374 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 16 156 - -
Lal13g0233 374 Gene3D - 118 309 - -
Lal13g0233 374 PANTHER ZGC:136493 28 338 - -
Lal13g0233 374 CDD GDH 16 334 - -
Lal13g0233 374 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 31 335 IPR006139 GO:0016616|GO:0051287
Lal13g0233 374 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 130 310 IPR006140 GO:0051287
Lal13g0233 374 Gene3D - 18 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0233 Lal-Chr13 1487426 1490694 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0233 K15893 - twl:120002736 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0233 13 1487426 1490694 Lal13g0233 13 1487426 1490694 ECH
Lal12g0265 12 1895584 1899052 Lal13g0233 13 1487426 1490694 LSH
Lal13g0233 13 1487426 1490694 Lal24g0198 24 1443548 1452666 LSH