Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1593 ATGTCGGATGCATATGAAGGCCAAGAGACTCCTTTACCACCAACTGTAACATTTGCCCGAAGAACATCCTCGGGCCGCTATGTCAGTTACTCAAGGGATGATCTTGATAGTGAGCTTGAGAATGGTGACTTCATGAATTACACTGTGCATATACCACCAACCCCTGATAACCAACCTATGGATACATCAATCTCACAGAAAGTTGAGGAGCTATATGTGTCCAATTCACTCTTCACAGGTGGGTTCAACAGTGTTACTCGAGCACATCTGATGGATAAGATAATAGAATCTGGAACAAACCATCCACAGATTGCTGGTGCAAAAGGATCTTCGTGTGCGGTTCTTGGATGTGATTCTAAGGTGATGAGTGATGAACGTGGTGTGGATATTCTTCCGTGTGAGTGTGATTTTAAGATATGCAGAGAATGTTACCTAGATGCAGTTAAAACAGGAGGTGGGTTATGCCTGGGATGCAAGGAGCCATATATGAACGCCGAACAAGATGGATTGGGTGTGGATGATATGCATCCCCTTTCACTTCATCCGCCAAGTGGAATATCTAAAATGGAGAGGAGAATGTCTAAGATGAAGTCAACTAATAAATCGGCATTGATGAGAAGCCAAACTGGAGACTTTGATCATAATAGGAGCCTCTTTGAAACAAAGGGTACCTATGGCTACGGCAATGCTTTATGGCCAAAGGAAGGAGGTTTTGGAAATGAAAAAGAGGAAAAAGTTGCTGAGCCAACTGAGTTTATGGACAAGCCATGGAGGCCCCTTACACGGAAACTGAAGATACCTGCAGCTATTCTGAGCCCATATCGGCTTATTATTTTTATCCGTTTGATTATACTGGGACTTTTCCTGGCGTGGAGGGTTATGCACAAAAATAGTGATGCGTTATGGCTATGGGGAATGTCTGTGGTTTGTGAGATCTGGTTTGCTTTTTCGTGGATTCTGGATCAACTTCCCAAACTATGCCCAGTGAACCGTTCCACCGATCTTAATATTCTTAAGGAGAAATTTGAAACACCGACTCTTAGCAATCCTACCGGAAAATCTGATCTTCCAGGCATAGATATCTTTGTCTCCACTGCTGATCCTGACAAAGAACCACCTCTTGTAACCGCCAACACTATCTTGTCCATTTTAGCTGCCGATTACCCAGTTGAGAAGCTGTCTTGCTATGTTTCTGATGACGGAGGCGCACTTCTAACTTTTGAGGCAATGGCTGAAGCTGCCAGCTTTGCTAATGAGTGGGTTCCTTTCTGCCGTAAACATGATATAGAGCCAAGAAATCCTGAATCTTATTTCAACTTAAAGGGAGACCCTTATAAAAACAAAGTGAAGCTTGATTTTGTCAAGGATCGTAGACGGTTGAAGCGTGAGTATGACGAGTTCAAGGTCAGGATTAACGGTCTACCTGACTCTATCCGTCGCCGGTCAGATGCCTATCATGCAAGAGAGGAAATCAATGCCATGAAACTTCGGAGACAAAGCAGGGAAGATGAACCTATAGAAACTGCAAAGATTCCCAAAGCAACATGGATGGCTGATGGAACTCATTGGCCAGGGACTTGGCTCAGTCCTACATCTGAGCACTCCAAGGGTGACCATGCTGGTATAATTCAGGTGATGTTGAAACCTCCCAGCAACCAACCTCTTCTCGGAAGTGCTGATGATGCAAAGCTTATCGACCTAACTGATATTGATATCCGTCTTCCGCTTCTTGTGTATGTTTCTCGAGAGAAGCTTCCAAGCTATGATCATAACAAAAAAGCGGGGGCCATGAATGCCTTGGTTCGTGCCTCTGCTGTAATGTCTAATGGTCCTTTTATACTCAATCTTGACTGTGATCACTATATCTACAACTCAAAGGCAATGAGGGAAGGCATGTGCTTTATGATGGATCGTGGAGGTGATCGCCTGTGTTATGTCCAGTTCCCACAGAGGTTTGAGGGGATTGATCCCTCTGATAGATATGCAAATCATAACACTGTATTCTTTGATGTGAATATGCGAGCCCTCGATGGACTTCAAGGGCCGTTCTATGTGGGTACCGGTTGCCTTTTTAGAAGGGTTGCACTTTATGGTTTTGACCCTCCTCGCTCTAAAGAGCACCACTCAGGTTTCTGTTCTTGCTGCTTTGGTCGTAAGAAGAAGCATGCATCATTAGCAAGTACCCCGGAAGAGAATCGAGCATTGAGGATGGGTGATGATGAAGAAGAAGAAATGGACCTATCGTCGTTCTCTAAGAAGTTTGGAGACTCAACTTTCCTCATTGACTCAATCCCGGTGGCAGAGTTCCAGGGCCGGCCACTTGCTGATCACCCTGCGGTGAAAAATGGACGCCCACCTGGCGCTCTCACCTTACCCCGTGCTCTTCTCGATGCACCAACTGTAGCAGAGGCTATCAGTGTCATCTCTTGTTGGTATGAGGACAAGACTGAGTGGGGGCAGCGTGTTGGATGGATCTATGGATCCGTTACTGAGGATGTGGTCACCGGATATAGGATGCACAATAGGGGATGGAAATCTGTGTACTGTGTGACAAAGCGTGATGCCTTCCGTGGAACTGCTCCTATCAATCTTACTGACAGGCTACATCAGGTTCTTCGATGGGCTACTGGCTCGGTCGAAATATTCTTCTCTCGAAACAATGCCCTTATGGCTAGCCCAAGAATGAAACTTCTTCAAAGAGTTGCATACCTTAATGTTGGAATTTATCCCTTCACTTCCTTCTTCCTTATTGTATATTGCTTCCTACCTGCACTGTCACTCTTCTCTGGCCAGTTCATAGTTCAAACCCTCAATATCACATTTCTCACGTATCTCTTAGGCATCACAGTAACCTTGTGCGTCCTAGCAGTGCTTGAAATCAAGTGGTCTGGCATTGAACTTGAAGAATGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACAAGCGCTCATCTAGCCGCAGTGCTTCAAGGTCTGCTCAAAATCATAGCAGGTATCGAAATCTCATTCACGTTGACTTCAAAATCTGGTGGCGATGACATAGACGATGAGTTTGCTGATCTATATGTTGTGAAATGGACATCACTTATGATACCACCAATCACAATCATATTGGTTAACTTGATAGCAATATCAGTTGGAGTTGGCAGAACCATATACAGTGCTATACCACAGTGGAGCCGTTTACTAGGTGGCGTTTTCTTCAGTTTTTGGGTCTTGTCACATCTCTATCCTTTTGCAAAAGGTTTGATGGGAAGAAGAGCGAGGATACCTACCATAGTTTATGTATGGTCAGGCCTCATTGCAATCACAATCTCTCTTCTCTGGGTAGCAATTAATCCTCCTGCTGGCAGTCAACAAGTTGGCGGTTCATTTCGTTTCCCATGGTCCTAG 3396 0.4482 MSDAYEGQETPLPPTVTFARRTSSGRYVSYSRDDLDSELENGDFMNYTVHIPPTPDNQPMDTSISQKVEELYVSNSLFTGGFNSVTRAHLMDKIIESGTNHPQIAGAKGSSCAVLGCDSKVMSDERGVDILPCECDFKICRECYLDAVKTGGGLCLGCKEPYMNAEQDGLGVDDMHPLSLHPPSGISKMERRMSKMKSTNKSALMRSQTGDFDHNRSLFETKGTYGYGNALWPKEGGFGNEKEEKVAEPTEFMDKPWRPLTRKLKIPAAILSPYRLIIFIRLIILGLFLAWRVMHKNSDALWLWGMSVVCEIWFAFSWILDQLPKLCPVNRSTDLNILKEKFETPTLSNPTGKSDLPGIDIFVSTADPDKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANEWVPFCRKHDIEPRNPESYFNLKGDPYKNKVKLDFVKDRRRLKREYDEFKVRINGLPDSIRRRSDAYHAREEINAMKLRRQSREDEPIETAKIPKATWMADGTHWPGTWLSPTSEHSKGDHAGIIQVMLKPPSNQPLLGSADDAKLIDLTDIDIRLPLLVYVSREKLPSYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPFYVGTGCLFRRVALYGFDPPRSKEHHSGFCSCCFGRKKKHASLASTPEENRALRMGDDEEEEMDLSSFSKKFGDSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTLPRALLDAPTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALMASPRMKLLQRVAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLNITFLTYLLGITVTLCVLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKIIAGIEISFTLTSKSGGDDIDDEFADLYVVKWTSLMIPPITIILVNLIAISVGVGRTIYSAIPQWSRLLGGVFFSFWVLSHLYPFAKGLMGRRARIPTIVYVWSGLIAITISLLWVAINPPAGSQQVGGSFRFPWS 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1593 1131 Pfam RING/Ubox like zinc-binding domain 116 162 - -
Lal23g1593 1131 Pfam Cellulose synthase 359 1120 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lal23g1593 1131 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 571 701 IPR029044 -
Lal23g1593 1131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 176 IPR013083 -
Lal23g1593 1131 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 23 1127 - -
Lal23g1593 1131 SUPERFAMILY Nucleotide-diphospho-sugar transferases 374 700 IPR029044 -
Lal23g1593 1131 SUPERFAMILY RING/U-box 98 166 - -
Lal23g1593 1131 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 23 1127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1593 Lal-Chr23 15861206 15866769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1593 2 1129 Glycosyltransferase AT3G03050 80.810 0.0 1934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1593 K20924 - gmx:100792604 2096.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1593 23 15861206 15866769 Lal23g1593 23 15861206 15866769 ECH
Lal16g0049 16 291879 297252 Lal23g1593 23 15861206 15866769 LSH
Lal15g0030 15 234390 239851 Lal23g1593 23 15861206 15866769 LSH