Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0030 ATGTCGTCAAAACCATTCAGGGCTAGTCGATCATCTTTATCAACAATGTCAGATGCATCTGAAGGCCAAAAGCCTCCTTTTCCTCCAAATGTAGCATTTGCCCGAAGAACTTCCTCGGGTCACTATGTCAGTTACTGTAGGGATGATCTTGATAGCGAGCTAGAGAGTAGTGACTACATGAATTACACAGTGCATTTACCACCCACCCCTGATAACCAACCTATGGATCTATCTATCTCACAGAAAGTTGAGGAGCAATATGTGTCGAATTCACTCTTCACAGGTGGATTCAACAGTGTTACTCGAGCGCATTTGATGGATAAAGTGACAGAATCTGAAGCAAACCATCCACAGATGGCTGGTGCAAAAGGTTCTTCGTGTGCAGTTCCTGGATGTGATTCTAAGGTGATGAGTGATGAACGTGGTGTGGATATTCTTCCTTGTGAGTGTGATTTTAAGATATGTAGAGATTGTTATATAGATGCAGTAAAAACGGGAGGTGGGATATGCCCAGGATGCAAGGATCCATATAAGAACACAGAACTAGATGAAGTTACCGTGGATGATGTGCATACCCTTTCACTTCCTCCGTCAAGTGGAATGTCTAAAATGGAGAGGAGATTGTCTAGGATGAAGTCAAATAGTAAATCGGCATTGGTGAGGAGCCAAACTGGAGACTTTGATCATAATAGGTGGCTTTTTGAAACAAAGGGTACCTATGGCTATGGCAATGCTTTATGGCCAAAGGAAGGAGGTTCTAGAAATGGAAAAGAGGGAGAAGTTGCTGAGCCAACTGAGTTTATGAACAGACCCTGGAGACCCCTTACACGGAAGCTGAAGATACCCGCTGCTATTCTGAGCCCATATCGGCTTATTATTTTTATCCGCTTGGTTGTACTGGCACTGTTCCTGACATGGAGGGTCAAGCACAAAAATACCGATGCAATCTGGCTATGGGGAATGTCTGTGGTTTGTGAGATCTGGTTTGCTTTTTCCTGGATTCTGGATCAACTTCCCAAACTATGCCCAGTGAATCGTTCCACTGATCTTAATATTCTGAAGGACAAATTTGAAACACCTACTCTTAGCAATCCTAGTGGAAAGTCCGATCTTCCAGGCATAGATATCTTTGTCTCCACTGCTGATCCTGAGAAAGAACCACCTCTTGTCACCGCCAACACTATCTTGTCTATTTTAGCTGCTGATTACCCGGTTGAGAAACTGTCTTGCTATGTTTCTGATGATGGTGGTGCGCTTCTAACTTTCGAGGCAATGGCTGAAGCTGCCAGCTTTGCTAATGAGTGGGTTCCGTTCTGCCGTAAACACGATATAGAGCCGAGGAATCCTGAATCATATTTCAACTTAAAGAGAGACCCTTATAAAAACAAAGTGAAGTCTGATTTTGTAAAGGATCGTAGACGGTTGAAGCGTGAGTATGACGAGTTCAAGGTCAGGATTAATAGTCTGCCTGACTCTATCCGTCGCCGGTCAGATGCCTATCATGCAAGAGAAGAAATAAAGGCCATGAAACTCCAGAGACAAACCAGGGAAGATGAACCGATAGAAACCCCAAAGATTCCAAAAGCAACATGGATGGCTGATGGAACTCATTGGCCAGGGACTTGGTTAAGTCCTACATCTGAGCACTCTAAGGGTGACCACGCTGGTATAATTCAGGTGATGTTGAAACCTCCCAGCGATGAACCTCTTCTCGGAGGTGCTGATGATGCAAAGCTTATCGACCTGACAGATATTGATATCCGTCTTCCCCTTCTTGTTTATGTTTCTCGAGAGAAGCGTCCGGGCTATGATCATAATAAAAAAGCAGGGGCCATGAATGCCTTGGTTCGTGCCTCTGCTATAATGTCAAATGGTCCTTTTATACTCAATCTTGACTGTGATCACTATATCTACAACTCCAAGGCAATGAGGGAAGGCATGTGCTTCATGATGGATCGTGGAGGTGACCGCCTATGTTATGTCCAGTTCCCGCAGAGGTTTGAGGGGATTGATCCCTCTGATAGATATGCAAATCATAACACTGTCTTCTTTGATGTCAATATGCGAGCCCTTGATGGACTTCAAGGGCCAGTCTATGTGGGAACCGGTTGCCTTTTTAGACGGGTTGCGCTTTATGGTTTTGACCCTCCTCGCTCTAAAGAGCACCACTCAGGTTTCTGTTTTTGCTGCTTTGGTCGTAAGAAGCATGCATCATCAGCAAGCACCCCCGAAGAGAATCGAGCACTAAGGATGGGTGATGATGATGATGAAGAAGAAATGAATTTATCATCGTTCCCTAAGAAATTTGGAAACTCAACTTTCCTCATTGACTCAATCCCTGTGGCAGAGTTCCAAGGCCGACCACTTGCTGATCACCCTGCGGTGAAAAATGGACGCCCACCTGGTGCTCTCACCATACCCCGTGATCTTCTCGATGCATCAACTGTAGCAGAGGCTATCAGTGTCATCTCTTGTTGGTATGAGGACAAGACTGAGTGGGGGCAGCGTGTCGGATGGATCTATGGATCCGTTACTGAGGATGTGGTCACTGGATATAGGATGCATAATAGGGGATGGAAATCTGTTTACTGTGTGACGAAACGTGATGCCTTCCGTGGAACTGCTCCTATCAATCTTACTGACAGGCTACATCAGGTTCTTCGATGGGCTACTGGTTCAGTTGAAATATTTTTCTCTCGAAACAATGCCCTTCTGGCTAGCCCACGAATGAAATTTCTTCAAAGAATTGCATACCTTAATGTTGGAATTTATCCCTTCACTTCCATCTTCCTTATTGTCTACTGCTTCCTTCCTGCACTGTCTCTCTTCTCTGGCCAGTTCATAGTTCAAACCCTCAGTGTGACATTTCTCTCTTATCTCTTAGGCATCACAGTCACTTTGTGCATGCTTGCAGTGCTTGAAATTAAGTGGTCCGGCATCGAGCTAGAAGAATGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACTAGTGCTCATCTCGCGGCGGTGCTTCAAGGTTTGCTGAAAGTCGTAGCTGGTATCGAAATCTCATTCACATTGACCTCAAAATCTGGTGGTGACGATGTAGATGATGAGTTTGCTGATCTGTATATTGTGAAATGGACATCACTTATGATACCACCAATCACAATCATGATGGTTAACTTGATAGCAATAGCAGTTGGAGTTAGCAGAACCATATACAGTGTTATACCACAGTGGAGTCGTTTACTAGGTGGTGTTTTCTTCAGTTTTTGGGTATTGACTCATCTCTATCCTTTTGCAAAAGGTTTGATGGGAAGAAGAGGAAGGACACCTACCATTGTTTTTGTATGGTCAGGCCTCATTGCAATTACAATCTCTCTTCTCTGGGTAGCAATTAATCCTCCTGCTGGTAATAACCAAATTGGTGGTTCATTCCAGTTCCCATGA 3435 0.4443 MSSKPFRASRSSLSTMSDASEGQKPPFPPNVAFARRTSSGHYVSYCRDDLDSELESSDYMNYTVHLPPTPDNQPMDLSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVTESEANHPQMAGAKGSSCAVPGCDSKVMSDERGVDILPCECDFKICRDCYIDAVKTGGGICPGCKDPYKNTELDEVTVDDVHTLSLPPSSGMSKMERRLSRMKSNSKSALVRSQTGDFDHNRWLFETKGTYGYGNALWPKEGGSRNGKEGEVAEPTEFMNRPWRPLTRKLKIPAAILSPYRLIIFIRLVVLALFLTWRVKHKNTDAIWLWGMSVVCEIWFAFSWILDQLPKLCPVNRSTDLNILKDKFETPTLSNPSGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANEWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKSDFVKDRRRLKREYDEFKVRINSLPDSIRRRSDAYHAREEIKAMKLQRQTREDEPIETPKIPKATWMADGTHWPGTWLSPTSEHSKGDHAGIIQVMLKPPSDEPLLGGADDAKLIDLTDIDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRSKEHHSGFCFCCFGRKKHASSASTPEENRALRMGDDDDEEEMNLSSFPKKFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRDLLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLSVTFLSYLLGITVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVVAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPAGNNQIGGSFQFP 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0030 1144 Pfam RING/Ubox like zinc-binding domain 129 178 - -
Lal15g0030 1144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 192 IPR013083 -
Lal15g0030 1144 Pfam Cellulose synthase 374 1135 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lal15g0030 1144 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 43 1142 - -
Lal15g0030 1144 MobiDBLite consensus disorder prediction 1 21 - -
Lal15g0030 1144 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 43 1142 - -
Lal15g0030 1144 MobiDBLite consensus disorder prediction 1 33 - -
Lal15g0030 1144 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 584 716 IPR029044 -
Lal15g0030 1144 SUPERFAMILY RING/U-box 112 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0030 Lal-Chr15 234390 239851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0030 2 1144 Glycosyltransferase AT3G03050 83.464 0.0 1998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0030 K20924 - gmx:100792604 2185.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0030 15 234390 239851 Lal15g0030 15 234390 239851 ECH
Lal15g0030 15 234390 239851 Lal16g0049 16 291879 297252 ECH
Lal16g0049 16 291879 297252 Lal15g0030 15 234390 239851 LSH
Lal15g0030 15 234390 239851 Lal23g1593 23 15861206 15866769 LSH