Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0049 ATGTCGAAACAATTCAGGAGTAGCCGATCATCTCTATCAACAATATCTGACGCATCTGAAGGCCAAAAGCCTCCTTTACCACCAAATGTAACATTTGCCCGGAGAACTTCATCTGGTCGCTATGTCAGTTACTCTAGGGATGATCTTGATAGTGAGTTAGGGAGTAGCGACTTCATGAATTACACAGTTCATATACCACCAACCCCTGATAACCAACCTATGGATCTGTCAATCTCACAGAAAGTTGAGGAGCAATATGTGTCAAATTCACTCTTCACAGGTGGATTCAACAGTGTTACTCGAGCGCATCTGATGGATAAGGTGATAGAATCTGAGGCAAACCATCCACAGATGGCTGGTGCGAAAGGATCTTCATGTGCGATTCGCGGATGTGATTCTAAGGTGATGAGTGATGAACGTGGTGTGGATATTCTTCCATGTGAGTGTGATTTTAAGATATGTAGAGATTGTTACATAGATGCAATAAAAACAGGAGGTGGGATATGCCCAGGATGCAAGGAGCAATATAAGAACGCCGAACTAGATGAAGTGGCTGTGGATGATGTGCATCCCCTTTCACTTCCTCCACCAAGTGAAATGTCTAAAATGGAGAGGAGATTGTCTAAGATGAAGTCGACTAATAAATCGGCATTAGTGAGGAGCCAAACCGGAGACTTTGATCATAATAGGTGGCTTTTTGAAACCAAGGGTACCTACGGCTATGGCAATGCTCTATGGCCAAAGGAAGGAGGGTTTGGAAATGGAAAAGGGGAAGAAGTTGGTGAACCAACTGAGTTTATGAACAGGCCCTGGAGGCCCCTTACGCGGAAGCTGAAGATACCTGCAGCTATTCTGAGCCCATATCGGCTTATTATTTTTATTCGGTTGGTTATACTTGGACTGTTCCTGGCATGGAGGGTCAAGCACAAAAATACTGATGCAATCTGGCTGTGGGGCATGTCTGTGGTTTGTGAGATCTGGTTTGCTTTTTCCTGGATTTTGGATCAACTTCCCAAACTATGCCCAGTGAACCGTTCCACCGATCTTAATATCCTGAAGGAGAAATTTGAAACACCAACTCTTGGCAATCCTACTGGAAAGTCTGATCTTCCAGGCATAGATATCTTTGTGTCCACAGCTGATCCTGAGAAAGAGCCGCCTCTTGTCACTGCCAACACTATCTTGTCTATTTTAGCTGCTGATTACCCAGTTGAGAAGCTGTCTTGCTATGTTTCTGATGACGGAGGTGCGCTTCTAACTTTTGAGGCAATGGCTGAAGCTGCCAGCTTTGCTAATGAGTGGGTTCCCTTCTGCCGTAAACATGATATAGAGCCGAGGAACCCTGAATCATATTTCAACTTAAAGAGAGACCCGTATAAAAACAAAGTGAAGCCTGATTTTGTCAAAGATCGTAGACGGTTGAAGCGTGAGTATGACGAGTTTAAGGTCAGGATTAATGGTCTGCCCGAATCTATCCGTCGCCGGTCAGATGCCTATCATGCAAGAGAGGAAATCAAGGCCATGAAACTTCAGAGACAAACCAGGGGAGATGAACCTATAGAAACTGTAAAGATTCCTAAAGCAACATGGATGGTTGATGGAACTCATTGGCCAGGGACTTGGTTAAGTCCTACATCTGAGCACTCCAAGGGTGACCACGCTGGTATAATTCAGGTGATGTTGAAACCTCCCAGCGATGTACCTCTTCTCGGGGGTTCTGATGAGGCAAAGCTTATCGACCTGACTGATATTGATATACGTCTTCCCCTCCTTGTTTATGTTTCTCGGGAGAAGCGTCCAGGGTATGATCATAACAAAAAAGCGGGGGCCATGAATGCCTTGGTCCGTGCCTCTGCTATAATGTCTAATGGTCCTTTTATACTCAATCTTGACTGTGATCACTATATCTACAACTCGAAGGCAATGAGGGAAGGCATGTGCTTTATGATGGATCGCGGAGGTGATCGCCTATGTTATGTCCAGTTCCCACAGAGGTTTGAGGGGATTGATCCCTCTGATAGATATGCTAATCATAACACTGTCTTCTTCGATGTCAATATGAGAGCCCTTGATGGACTTCAAGGGCCAGTCTATGTGGGAACCGGTTGCCTTTTTAGACGGGTTGCGCTTTATGGTTTTGACCCTCCTCGCTCTAAAGAGCACCACCCAGGTTTCTGTTCTCGCTGCTTTGGTCGTAAGAAGAAGCATGCATCATTAGCAAGCACCCATGAAGAGAATCCGGGACTAAGGATGGGTGATGAGTATGATGATGATGATGGAGAAGTAATGAACCTATCAACGTTCCCAAAGAAGTTTGGCAACTCAAATTTCCTCATTGACTCAATCCCGGTGGCAGAGTTCCAGGGCCGACCACTTGCTGATCATCCTGCAGTGAAAAATGGTCGACCGCCTGGTGCTTTGACCATACCCCGTGATCTTCTCGATGCATCAACCGTAGCAGAAGCCATTAGTGTCATCTCCTGTTGGTACGAGGATAAGACTGAGTGGGGGCAGCGTGTTGGGTGGATCTATGGATCGGTCACTGAGGATGTGGTCACCGGATATAGGATGCACAATAGGGGTTGGAAATCTGTTTACTGTGTGACAAAGCGTGATGCCTTCCGTGGAACTGCTCCTATCAATCTCACTGACAGGTTACACCAGGTTCTTCGATGGGCTACAGGCTCGGTCGAAATATTCTTCTCTCGAAACAATGCCCTTCTGGCTAGCCCAAGAATGAAACTTCTTCAAAGAATTGCATACCTCAATGTTGGAATCTACCCCTTCACTTCCATCTTTCTTATTGTATACTGCTTCCTTCCTGCACTGTCACTCTTCTCTGGCCAATTCATAGTTCAAACGCTCAATGTCACATTTCTGTCTTATCTCTTAGGCATCACAGTGACTTTGTGCATACTTGCAGTGCTTGAAATCAAGTGGTCTGGCATTGAGCTAGAAGAGTGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACAAGCGCTCATCTAGCTGCGGTGCTTCAAGGTTTGCTCAAAGTCGTAGCTGGTATCGAAATCTCATTCACGTTGACTTCAAAATCTGGTGGTGATGATGTAGATGATGAGTTTGCTGATCTATATATTGTGAAATGGACATCACTTATGATACCACCAATCACAATTATGATGGTTAACTTGATAGCAATAGCAGTTGGAGTTAGCAGAACCATATACAGTGTTATACCACAGTGGAGCCGTTTACTGGGTGGTGTTTTCTTCAGTTTTTGGGTATTGACTCATCTCTATCCTTTTGCAAAAGGTTTGATGGGAAGAAGATGGAGGACACCTACCATTGTTTTTGTATGGTCAGGCCTCATTGCAATTACAATCTCCCTTCTCTGGGTAGCAATCAATCCTCCTGCTGGTACTAACCAAATTGGTGGTTCATTTCAGTTCCCGTGA 3444 0.4509 MSKQFRSSRSSLSTISDASEGQKPPLPPNVTFARRTSSGRYVSYSRDDLDSELGSSDFMNYTVHIPPTPDNQPMDLSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHPQMAGAKGSSCAIRGCDSKVMSDERGVDILPCECDFKICRDCYIDAIKTGGGICPGCKEQYKNAELDEVAVDDVHPLSLPPPSEMSKMERRLSKMKSTNKSALVRSQTGDFDHNRWLFETKGTYGYGNALWPKEGGFGNGKGEEVGEPTEFMNRPWRPLTRKLKIPAAILSPYRLIIFIRLVILGLFLAWRVKHKNTDAIWLWGMSVVCEIWFAFSWILDQLPKLCPVNRSTDLNILKEKFETPTLGNPTGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANEWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKPDFVKDRRRLKREYDEFKVRINGLPESIRRRSDAYHAREEIKAMKLQRQTRGDEPIETVKIPKATWMVDGTHWPGTWLSPTSEHSKGDHAGIIQVMLKPPSDVPLLGGSDEAKLIDLTDIDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRSKEHHPGFCSRCFGRKKKHASLASTHEENPGLRMGDEYDDDDGEVMNLSTFPKKFGNSNFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRDLLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLGITVTLCILAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVVAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRWRTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0049 1147 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 33 1145 - -
Lal16g0049 1147 MobiDBLite consensus disorder prediction 1 20 - -
Lal16g0049 1147 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 583 715 IPR029044 -
Lal16g0049 1147 Pfam RING/Ubox like zinc-binding domain 129 177 - -
Lal16g0049 1147 SUPERFAMILY RING/U-box 111 180 - -
Lal16g0049 1147 Pfam Cellulose synthase 373 1138 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lal16g0049 1147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 190 IPR013083 -
Lal16g0049 1147 MobiDBLite consensus disorder prediction 1 33 - -
Lal16g0049 1147 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 33 1145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0049 Lal-Chr16 291879 297252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0049 2 1147 Glycosyltransferase AT3G03050 83.174 0.0 1991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0049 K20924 - gmx:100792604 2182.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0049 16 291879 297252 Lal16g0049 16 291879 297252 ECH
Lal15g0030 15 234390 239851 Lal16g0049 16 291879 297252 ECH
Lal16g0049 16 291879 297252 Lal15g0030 15 234390 239851 LSH
Lal16g0049 16 291879 297252 Lal23g1593 23 15861206 15866769 LSH