Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1557 ATGGCCTCCACTGTCACTATTAACATTACTAATACCTCCTCTTATATAAATTCACCGCCTTCTTTTCTTTCACATGTTAAGGTTTCAAATCCATCATCACTACCAAATCCTTCATCATCCTCTGCCGTTTCATCTCAAAACGCTTTTATGACTCCCAAAACTGTTCTAGTTACCGGTGGAGCCGGTTACATTGGTACCCACACCGTTCTTCAACTTTTGCTCGCTGATTTCAAAACCGTTGTTGTCGATAACTTTGATAATTCTTCAGATGTTGCCATTCGTAGAGTTAAGGAACTCGCTGGAGAATTCGGGAATAACCTTTCGTTTCATAAGGCAGACCTCCGGGACAGAGATGCACTTGAGCAAATTTTTGTTTCTACAAAGTTTGATGCTGTCATACATTTTGCTGGATTGAAAGCAGTAGGTGAAAGTGTGCAGAAACCATTGCTCTACTACAACAACAACTTGAATGGGACAATCACTCTCTTGGAAGTGATGGCTGCCCATGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCCACTGTATATGGTTGGCCAAAGGAGGTTCCTTGTACAGAAGAGTTCCCTCTGTCAGCAGCGAATCCATATGGACGAACTAAGCTTATCATCGAAGATATTTGCCGTGATGTCTACAATTCAGAGCAAGATTGGAAAATAATCTTGTTGAGATACTTCAACCCAGTCGGAGCACATCCTAGTGGTTATATTGGGGAGGACCCTCGAGGAATTCCAAACAACCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGAAGACGACCCACACTGACCATTTTCGGAAATGATTATAATACGATCGATGGCACTGGGGTCCGCGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCATTGCTTAAATTAGATGAATCTAATATAGGTTGTGAGGTTTATAACTTGGGAACAGGAAGGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAACAGGCCGCGGGAAAGAAAATTCCAGTTTTGATGGCTGGCAGGAGACCTGGTGATGCTGAAATTGTGTATGCATCAACAGAGAAAGCAGAAAGAGAACTTAAGTGGAAGGCAAAATATGGCATTGACGAGATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGATATGAATCTCAGGAGGATTCTACAGATTAA 1200 0.4233 MASTVTINITNTSSYINSPPSFLSHVKVSNPSSLPNPSSSSAVSSQNAFMTPKTVLVTGGAGYIGTHTVLQLLLADFKTVVVDNFDNSSDVAIRRVKELAGEFGNNLSFHKADLRDRDALEQIFVSTKFDAVIHFAGLKAVGESVQKPLLYYNNNLNGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLIIEDICRDVYNSEQDWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPTLTIFGNDYNTIDGTGVRDYIHVVDLADGHIAALLKLDESNIGCEVYNLGTGRGTSVLEMVRAFEQAAGKKIPVLMAGRRPGDAEIVYASTEKAERELKWKAKYGIDEMCRDQWNWASKNPYGYESQEDSTD 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1557 399 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 50 391 IPR036291 -
Lal23g1557 399 Gene3D - 55 324 - -
Lal23g1557 399 Gene3D - 243 384 - -
Lal23g1557 399 TIGRFAM galE: UDP-glucose 4-epimerase GalE 55 389 IPR005886 GO:0003978|GO:0006012
Lal23g1557 399 Pfam GDP-mannose 4,6 dehydratase 56 379 IPR016040 -
Lal23g1557 399 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 50 395 - -
Lal23g1557 399 PANTHER UDP-GLUCOSE 4-EPIMERASE 50 395 - -
Lal23g1557 399 CDD UDP_G4E_1_SDR_e 54 383 IPR005886 GO:0003978|GO:0006012
Lal23g1557 399 PRINTS Nucleotide sugar epimerase signature 81 97 - -
Lal23g1557 399 PRINTS Nucleotide sugar epimerase signature 285 300 - -
Lal23g1557 399 PRINTS Nucleotide sugar epimerase signature 311 326 - -
Lal23g1557 399 PRINTS Nucleotide sugar epimerase signature 350 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1557 Lal-Chr23 15633348 15642358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1557 39 368 Miscellaneous Gene Families AT4G00110 27.035 1.00e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1557 K01784 - gmx:100792137 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1557 23 15633348 15642358 Lal23g1557 23 15633348 15642358 ECH
Lal23g1557 23 15633348 15642358 Lal16g1151 16 7854416 7858861 PCT
Lal23g1557 23 15633348 15642358 Lal15g1453 15 16746957 16752539 PCT