Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1151 ATGGCTGTCAAAACTGTTTTGGTTACCGGTGGAGCCGGTTACATCGGCAGCCACACCGTCCTTCAGCTCCTCCTCGGCGGTTACAAGGTTGTTGTCGTTGATAACCTTGACAATTCTTCTGAAACCGCCATCAAGAGAGTAAAGGAACTCGCTGGAAAATCCAAAAGCAACGTTTCGTTTTATAAGTTAGACCTCAGGGACAGAGCTGCACTCGAGAAAGTTTTTACTTCTAAGAAGTTTGATGCTGTCATACATTTTGCTGGGCTGAAAGCAGTAGGTGAAAGTGTTCACAAACCACTAGTCTACTATGACAACAATTTGATTGGTACAATCATTCTATTTGAAGTAATGGCTGCTCATGGATGCAGAAAGCTTGTGTTCTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTCCCATGTACTGAAGAGTTCCCTTTGTCAGCAGCAAACCCTTATGGACGAACCAAGCTTATCATTGAAGAAATTTGCCGCGACATCTACAATGCAGAATCTGAATGGAAAATAATATTGTTGAGATACTTCAATCCCGTTGGTGCACATCCTAGTGGTTGTATTGGTGAGGATCCCCGTGGAATTCCGAACAACCTGATGCCGTTTGTTCAGCAAGTAGCAGTTGGTAGACTCCCTGCACTTAAAGTTTTTGGTACTGATTATAACACAAGGGATGGCACTGGAATTCGCGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCATTGAATAAACTGGATGATCCTAATATAGGATGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAAAGCTTTTGAACAGGCCTCTGAAAAGAAAATTCCACTTGTGATGGTTGGTCGGAGACCTGGAGATGCTGAAATTGTTTATGCATCAACAGAGAAAGCGGCAAAAGAGCTTAATTGGAAAGCAAAATATGGCATTGATGAGATGTGCAGGGATCAGTGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGATCTGCAGAAAACTCCTCCAAAAAACGTTAA 1059 0.4259 MAVKTVLVTGGAGYIGSHTVLQLLLGGYKVVVVDNLDNSSETAIKRVKELAGKSKSNVSFYKLDLRDRAALEKVFTSKKFDAVIHFAGLKAVGESVHKPLVYYDNNLIGTIILFEVMAAHGCRKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLIIEEICRDIYNAESEWKIILLRYFNPVGAHPSGCIGEDPRGIPNNLMPFVQQVAVGRLPALKVFGTDYNTRDGTGIRDYIHVVDLADGHIAALNKLDDPNIGCEVYNLGTGKGTSVLEMVKAFEQASEKKIPLVMVGRRPGDAEIVYASTEKAAKELNWKAKYGIDEMCRDQWNWASKNPYGYGSAENSSKKR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1151 352 Gene3D - 6 275 - -
Lal16g1151 352 PRINTS Nucleotide sugar epimerase signature 32 48 - -
Lal16g1151 352 PRINTS Nucleotide sugar epimerase signature 236 251 - -
Lal16g1151 352 PRINTS Nucleotide sugar epimerase signature 262 277 - -
Lal16g1151 352 PRINTS Nucleotide sugar epimerase signature 301 318 - -
Lal16g1151 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 341 IPR036291 -
Lal16g1151 352 Gene3D - 194 335 - -
Lal16g1151 352 CDD UDP_G4E_1_SDR_e 5 334 IPR005886 GO:0003978|GO:0006012
Lal16g1151 352 TIGRFAM galE: UDP-glucose 4-epimerase GalE 6 340 IPR005886 GO:0003978|GO:0006012
Lal16g1151 352 PANTHER UDP-GLUCOSE 4-EPIMERASE 1 4 348 - -
Lal16g1151 352 PANTHER UDP-GLUCOSE 4-EPIMERASE 4 348 - -
Lal16g1151 352 Pfam GDP-mannose 4,6 dehydratase 7 330 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1151 Lal-Chr16 7854416 7858861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1151 5 319 Miscellaneous Gene Families AT4G00110 28.267 1.29e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1151 K01784 - gmx:100812565 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1151 16 7854416 7858861 Lal16g1151 16 7854416 7858861 ECH
Lal16g1151 16 7854416 7858861 Lal15g1453 15 16746957 16752539 LSH
Lal23g1557 23 15633348 15642358 Lal16g1151 16 7854416 7858861 PCT