Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1453 ATGTCACCGAAAACCGTTTTGGTTACCGGCGGAGCCGGTTACATCGGCAGCCACACCGTCCTTCAACTCCTCCACGGCGGTTACAATGCCGTCGTCGTCGATAATCTTGATAATTCATCTGAAGTTGCTATCCATAGAGTCAAAGACCTTGCCGGAGAATTCAAAGCCAATCTTTCCTTCTATAAGTTAGACCTTAGGGACAGAGCTGCACTTGAGAAAGTTTTTGCTTCTACAAAGTTTGATGCTGTCATACATTTTGCTGGGCTGAAAGCAGTAGGTGAAAGTGTGCAGAAACCACTTCTCTACTATGACAACAACTTGATTGGAACAATCATTCTATTTGAAGTAATGGCTGCTCATGGATGCAAAAAGCTTGTGTTCTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCGTGTACCGAAGATTTCCCTTTGTCGGCAGCAAACCCGTATGGACGAACCAAGCTTATCATTGAAGACATTTGTCACGACATCTACCGTGGAGACTCAGAATGGAAAATGATATTGTTGAGATATTTCAACCCTGTTGGTGCACATCCTAGTGGTTCAATTGGCGAGGATCCTCGAGGAATTCCTAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCAGACGCCCGGCATTGACAATTTTCGGAACTGATTATAATACAACTGATGGCACTGGAGTTCGAGATTACATTCATGTTGTTGATTTAGCAGACGGGCACATTGCTGCGTTAAATAAACTAGATGATCCTAAAATAGGATGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACTTCAGTTTTAGAGATAGTAAAAGCTTTTGAGCAGGCCTCTGGAAAGAAAATTCCACTCGCGGTGGCCGGCCGGAGAGCCGGAGATGCTGAAGTTGTTTATGCATCAATAGAAAAAGCAGCAAAAGAGCTTAATTGGAAGGCAAAATATGGCATTGATGAGATGTGCAGGGATCAGTGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGATCTTCAGAAGAATCAACCAATTAA 1053 0.4349 MSPKTVLVTGGAGYIGSHTVLQLLHGGYNAVVVDNLDNSSEVAIHRVKDLAGEFKANLSFYKLDLRDRAALEKVFASTKFDAVIHFAGLKAVGESVQKPLLYYDNNLIGTIILFEVMAAHGCKKLVFSSSATVYGWPKEVPCTEDFPLSAANPYGRTKLIIEDICHDIYRGDSEWKMILLRYFNPVGAHPSGSIGEDPRGIPNNLMPFVQQVAVGRRPALTIFGTDYNTTDGTGVRDYIHVVDLADGHIAALNKLDDPKIGCEVYNLGTGKGTSVLEIVKAFEQASGKKIPLAVAGRRAGDAEVVYASIEKAAKELNWKAKYGIDEMCRDQWNWASKNPYGYGSSEESTN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1453 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 341 IPR036291 -
Lal15g1453 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 4 348 - -
Lal15g1453 350 TIGRFAM galE: UDP-glucose 4-epimerase GalE 6 340 IPR005886 GO:0003978|GO:0006012
Lal15g1453 350 CDD UDP_G4E_1_SDR_e 5 334 IPR005886 GO:0003978|GO:0006012
Lal15g1453 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 1 4 348 - -
Lal15g1453 350 Gene3D - 6 275 - -
Lal15g1453 350 Gene3D - 194 335 - -
Lal15g1453 350 Pfam GDP-mannose 4,6 dehydratase 7 330 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1453 Lal-Chr15 16746957 16752539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g1453 5 319 Miscellaneous Gene Families AT4G00110 27.744 9.20e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1453 K01784 - gmx:100812565 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1453 15 16746957 16752539 Lal15g1453 15 16746957 16752539 ECH
Lal16g1151 16 7854416 7858861 Lal15g1453 15 16746957 16752539 LSH
Lal23g1557 23 15633348 15642358 Lal15g1453 15 16746957 16752539 PCT