Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1405 ATGTGGCGGTGCGTGGCTCGTAGACTCGGTTCTCCACCTGCTTCTAACAGATCCTCTCCTAGATCTCTCATTTCTAGATTCTTCTCTAGTGGTGAAAGCTCGTCGTCATATACGGTGGTGGATCATAAATATGATGCTGTTGTGGTAGGTGCTGGTGGAGCAGGGTTGAGAGCTGCTATTGGACTTTCTGAACATGGTTTCAATACTGCTTGCATTACCAAGCTCTTCCCAACTCGTTCACACACTGTTGCAGCTCAAGGTGGTATAAATGCTGCATTGGGAAATATGACTGAGGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGAGATCAGGATGCCATCCAATATATGTGTAGGGAGGCACCAAAAGCAGTCATTGAGCTCGAGAATTATGGATTGCCATTTTCCCGAACTGAGGAAGGAAAAATATATCAGCGTGCATTTGGGGGGCAAAGCTTGAACTATGGAAAGGGTGGTCAGGCTTACCGATGTGCATGTGCTGCTGATCGAACTGGACATGCTTTATTGCACACTCTATATGGCCAGGCCATGAAACATAATACCCAGTTCTTTGTGGAATATTTTGCATTGGATCTTTTAATGAACAATGATGGCACTTGCCAAGGAGTAATTGCCTTGAATATGGAGGATGGAACATTACATCGTTTCCAAGCTGCTTCAACAATTTTGGCCACAGGGGGTTATGGTAGAGCATATTTTTCTGCTACCTCGGCACATACATGCACTGGAGATGGCAATGCCATGGCTGCACGTGCTGGGATCCCACTTGAGGATTTAGAGTTTGTGCAATTTCACCCAACAGGTATATATGGAGCAGGTTGCCTCATCACAGAAGGTTCTCGTGGTGAAGGTGGAATTCTTAGGAATAGTGAGGGTGAGCGATTTATGGAACGATATGCTCCCACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCTAGATCAATGACTATGGAGATTCGAGAAGGTCGCGGTGTAGGACCCCATAAAGATCACATTTATCTCCACTTGAATCACTTACCCCCAGATGTACTCAAGGAGAGACTTCCTGGTATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTAACAAAGGAGCCCATTCCTGTTCTGCCAACTGTGCATTATAACATGGGTGGTATTCCCACAAATCACCATGGAGAGGTTGTTACTATTAAAGGTGATAATCCAGATGCAATAGTTCCTGGATTGATGGCTGCTGGGGAAGCGGCGTGTGCATCAGTCCATGGTGCCAATAGGCTTGGTGCTAACTCACTTCTGGACATTGTTGTTTTTGGGGAGAAGCAAAAACCATTAGAGAAGGATGCTGGTCAGAAAACAATTGCATGGCTGGACAAATTGAGAAATTCAAATGGTTCGTTGCCAACTTCTAAAATTCGGTTGAATATGCAAAGAGTAATGCAAAACAATGCTGCTGTGTTCCGTACGCAAGAAACATTAGAAGAAGGTTGTCAACTAATTGATAAAACATGGGAGAGTTTCCATGATGTCAAGGTTGAAGACCGAACTTTGATATGGAACTCTGACTTGATTGAGACTATTGAGTTGGAAAATCTTTTAATAAATGCGTGCATCACAATGCACTCTGCTGAAGCCAGAAAAGAAAGTAGAGGTGCTCATGCACGTGAGGACTTCAAGGTAAGAGATGATGAGAGCTGGATGAAACACACTGTTGGATATTGGGAAAACGAGAAGGTCCGGTTAGATTACAGGCCGGTGCACATGAATACACTGGATGATGAGGTTGAATCATTCCCTCCTAAAGCTCGTGTGTATTAA 1845 0.4434 MWRCVARRLGSPPASNRSSPRSLISRFFSSGESSSSYTVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLNYGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNNDGTCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMAARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPHKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDNPDAIVPGLMAAGEAACASVHGANRLGANSLLDIVVFGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKTWESFHDVKVEDRTLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFKVRDDESWMKHTVGYWENEKVRLDYRPVHMNTLDDEVESFPPKARVY 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1405 614 Gene3D - 454 565 - -
Lal23g1405 614 PIRSF SDHA_APRA_LASPO 34 604 - -
Lal23g1405 614 Pfam Fumarate reductase flavoprotein C-term 483 614 IPR015939 GO:0016491
Lal23g1405 614 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 273 391 IPR027477 -
Lal23g1405 614 Pfam FAD binding domain 45 441 IPR003953 -
Lal23g1405 614 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 79 88 IPR003952 GO:0016491
Lal23g1405 614 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 42 614 IPR011281 GO:0006099|GO:0016627|GO:0050660
Lal23g1405 614 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 45 614 IPR014006 GO:0016627|GO:0022900|GO:0050660
Lal23g1405 614 Gene3D succinate dehydrogenase protein domain 566 614 - -
Lal23g1405 614 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 22 614 IPR030664 -
Lal23g1405 614 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 473 614 IPR037099 GO:0016491
Lal23g1405 614 Gene3D - 45 449 IPR036188 -
Lal23g1405 614 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 22 614 - -
Lal23g1405 614 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 283 386 IPR027477 -
Lal23g1405 614 SUPERFAMILY FAD/NAD(P)-binding domain 36 449 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1405 Lal-Chr23 14627710 14637498 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1405 K00234 - gmx:100802169 1134.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1405 23 14627710 14637498 Lal23g1405 23 14627710 14637498 ECH
Lal16g0174 16 1049207 1053417 Lal23g1405 23 14627710 14637498 LSH
Lal15g0129 15 912551 919538 Lal23g1405 23 14627710 14637498 LSH