Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0174 ATGTGGAGGTGTGTGGCTCGTAGACTTAGTACTCCAGTTGCTACTAACAGATCTAATCCTAGATCATTCATTTCTAGATTTTTCTCTAGTGGTGAAAATTCGTCATACACGGTGGTGGATCATAAGTATGATGCAGTTGTGGTAGGTGCTGGTGGAGCAGGGTTGAGAGCTGCTATTGGTCTTTCTGAACATGGCTTCAATACTGCTTGCATTACCAAGCTCTTCCCAACTCGTTCACACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCATTGGGAAATATGTCCGAGGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGAGATCAGGATGCTATCCAATATATGTGTAGGGAGGCACCAAATGCAGTCATTGAGCTAGAGAATTATGGACTGCCATTCTCCCGAACTGAAGATGGAAAAATATATCAGCGTGCATTTGGGGGCCAAAGCTTGAACTATGGAATGGGTCGTCAGGCTTTCCGATGTGCATGTGCTGCTGATCGAACTGGACATGCTTTATTGCACACTCTATATGGCCAGGCCATGAAACATAATACCCTGTTCTTTGTGGAATATTTTGCATTGGATCTTTTAATGAATAATGATGGCACTTGCCAAGGAGAAATTGTCTTGAATATGGAGGACGGAACATTACATCGTTTCCAAGCTGCTTCAACAATTTTGGCTACAGGGTATCAATCTTTTTCTACTTCGGGTTATGGTAAAGCATACTTCTCTGCTACCTCTGCACATACATGCACTGGAGATGGTAATGCCATGGTTGCACGTGCTGGGGTCCCACTTGAGGATTTAGAGTTTGTGCAATTTCACCCAACAGGTATATATGGAGCAGGTTGCCTTATCACCGAAGGTTCTTGTGGTGAAGGTGGAATTCTTAGGAATAGTGAGGGTGAGCGATTTATGGATCGATATGCTCCCACTGCAAAGGATCTCGCATCAAGAGATGTAGTTTCTAGATCAATGACTATGGAGATTCGGGAAGGCCGCGGTGTAGGACCCCTGAAAGATCACATTTATCTCCACTTGAATCACTTGCCCCCAGATCTGCTCAAGGAGAGACTTCCTGGTATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTAACAAAGGAGCCTATTCCTGTTCTGCCAACAGTGCATTATAACATGGGCGGTATTCCCACAAACCATCATGGAGAG 1227 0.4491 MWRCVARRLSTPVATNRSNPRSFISRFFSSGENSSYTVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPNAVIELENYGLPFSRTEDGKIYQRAFGGQSLNYGMGRQAFRCACAADRTGHALLHTLYGQAMKHNTLFFVEYFALDLLMNNDGTCQGEIVLNMEDGTLHRFQAASTILATGYQSFSTSGYGKAYFSATSAHTCTGDGNAMVARAGVPLEDLEFVQFHPTGIYGAGCLITEGSCGEGGILRNSEGERFMDRYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDLLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGE 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0174 409 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 20 409 IPR030664 -
Lal16g0174 409 Gene3D - 44 407 IPR036188 -
Lal16g0174 409 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 289 392 IPR027477 -
Lal16g0174 409 Pfam FAD binding domain 44 409 IPR003953 -
Lal16g0174 409 SUPERFAMILY FAD/NAD(P)-binding domain 35 407 IPR036188 -
Lal16g0174 409 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 279 397 IPR027477 -
Lal16g0174 409 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 20 409 - -
Lal16g0174 409 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 78 87 IPR003952 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0174 Lal-Chr16 1049207 1053417 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0174 K00234 - gmx:100818379 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0174 16 1049207 1053417 Lal15g0129 15 912551 919538 LSH
Lal16g0174 16 1049207 1053417 Lal23g1405 23 14627710 14637498 LSH