LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal15g0129	ATGTGGAGGTGCGTGGCTCGTAGACTTGGTGCTTCAGCTGCTTCAACCAGATCCACTCCTACGTCTCTCATTTCTAGATTCTTCTCCAGTGATGTAAAGTCGTCGTATACGGTGGTGGATCATAAGTATGATGCAGTTGTTGTAGGTGCTGGTGGAGCAGGGTTGAGGGCTGCTATTGGACTCTCTGAACATGGCTTCAATACTGCTTGCATTACTAAGCTCTTCCCAACTCGTTCACACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCATTGGGTAATATGACCGAGGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGAGACCAGGATGCCATCCAATATATGTGTAGGGAGGCACCAAAAGCAGTCATTGAGCTAGAGAACTATGGATTGCCATTTTCCCGAACTGAGGATGGAAAAATATATCAGCGTGCATTTGGGGGCCAAAGCTTGAACTATGGAAAAGGTGGTCAGGCTTACCGATGTGCATGTGCTGCTGATCGAACTGGACATGCTTTGTTGCACACTCTATATGGCCAGGCCATGAAACATAATACCCAGTTCTTTGTGGAATATTTTGCCTTGGATCTTTTAATGAATAATGATGGCACTTGCCAAGGAGTAATTGCCTTGAATATGGAGGATGGGACATTACACCGTTTCCAAGCTGCTTCAACAATTTTGGCCACAGGGGGGTATGGTAGAGCATACTTTTCTGCAACCTCGGCACATACATGCACTGGAGATGGCAATGCCATGGTTGCACGGGCTGGGATCCCACTTGAGGATTTAGAGTTTGTGCAATTTCACCCAACAGGTATATATGGAGCAGGTTGCCTTATCACAGAAGGTTCTCGTGGTGAAGGTGGAATTCTTAGGAATAGTGAGGGTGAGCGATTTATGGAACGATATGCTCCCACTGCAAAGGATCTCGCATCAAGGGATGTAGTTTCTAGATCAATGACTATGGAGATTCGGGAAGGTCGCGGTGTAGGTCCCATGAAAGACCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTGCTCAAGGAGAGGCTTCCTGGTATCTCCGAAACTGCTGCTATTTTTGCTGGTGTGGATGTAACAAAGGAACCCATTCCAGTTCTGCCAACTGTGCATTATAACATGGGTGGTATTCCCACAAACCATCATGGAGAGGTGGTTACCATTAAAGGTGATAATCCAGATGCAGCAGTTCCTGGATTGATGGCTGCTGGGGAAACAGCCTGTGCATCAGTCCATGGTGCCAATAGGCTTGGCGCAAACTCACTTCTGGACATTGTTGTTTTTGGTGAGAAACAAAAGCCATTAGAGAAGGATGCTGGTCAGAAAACAATTGCATGGCTGGACAAATTGAGAAATTCAAATGGCTCGCTGCCAACTTCTAAAATTCGGTTGAATATGCAAAGAGTAATGCAAAACAATGCTGCTGTATTCCGTACGCAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACATGGGAGAGCTTTCAAGATGTCAAGGTTGAAGACCGGACTTTGATCTGGAACTCTGACTTGATTGAGACAATTGAGTTGGAAAATCTTTTGATAAATGCCTGCATCACAATGCACTCTGCTGAAGCCAGGAAAGAAAGTAGAGGTGCTCATGCCCGTGAGGACTTCAAGGTGAGAGATGATGAGAACTGGATGAAACACACTGTTGGATTTTGGGAAAATGAGAAGGTCCGGTTAGATTACAGGCCGGTGCACATGAATACACTGGATGATGAGGTTGAATCATTCCCTCCCAAAGCTCGTGTGTATTAA	1842	0.4549	MWRCVARRLGASAASTRSTPTSLISRFFSSDVKSSYTVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNYGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNNDGTCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPMKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDNPDAAVPGLMAAGETACASVHGANRLGANSLLDIVVFGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKTWESFQDVKVEDRTLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFKVRDDENWMKHTVGFWENEKVRLDYRPVHMNTLDDEVESFPPKARVY	613

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal15g0129	613	Pfam	Fumarate reductase flavoprotein C-term	482	613	IPR015939	GO:0016491
	Lal15g0129	613	TIGRFAM	sdhA_forward: succinate dehydrogenase, flavoprotein subunit	41	613	IPR011281	GO:0006099\|GO:0016627\|GO:0050660
	Lal15g0129	613	Pfam	FAD binding domain	44	440	IPR003953	-
	Lal15g0129	613	PANTHER	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	20	613	IPR030664	-
	Lal15g0129	613	PANTHER	SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL	20	613	-	-
	Lal15g0129	613	Gene3D	-	453	564	-	-
	Lal15g0129	613	ProSitePatterns	Fumarate reductase / succinate dehydrogenase FAD-binding site.	78	87	IPR003952	GO:0016491
	Lal15g0129	613	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain	472	613	IPR037099	GO:0016491
	Lal15g0129	613	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	272	390	IPR027477	-
	Lal15g0129	613	SUPERFAMILY	FAD/NAD(P)-binding domain	35	448	IPR036188	-
	Lal15g0129	613	Gene3D	succinate dehydrogenase protein domain	565	613	-	-
	Lal15g0129	613	Gene3D	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	282	385	IPR027477	-
	Lal15g0129	613	Gene3D	-	44	448	IPR036188	-
	Lal15g0129	613	TIGRFAM	sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit	44	613	IPR014006	GO:0016627\|GO:0022900\|GO:0050660
	Lal15g0129	613	PIRSF	SDHA_APRA_LASPO	33	603	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal15g0129	Lal-Chr15	912551	919538	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal15g0129	K00234		-	gmx:100818379	1148.27

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal16g0174	16	1049207	1053417	Lal15g0129	15	912551	919538	LSH
	Lal15g0129	15	912551	919538	Lal23g1405	23	14627710	14637498	LSH