Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1253 ATGTACAGTCACAGGGAGCGAGAGAGACAAAGAGGAACCGTTCCCTCCAAATCGGAGCTGGATCGTAAACGAATTAGCGACGTCCTCGATCGATCCTCACCGTCCACATCAAAGGTAATCAACGGCGGCAAGGACAGATCCTCCGCTAAGTCCTCGTCATACACCAACACGGACTCTCGCTCCGCCTCAAACCCTATCTCCAAGAATTCAAACGCTTCTGATGAAGAATCTGAAACTGATAGCGAGGGATCAGATATTAGTGGCTCAGATGGAGATGACACGTCATGGATCTCTTGGTTCTGCAATTTGAGAGGGAATGAATTCTTTTGTGAAGTTGATGATGATTATATTCAGGATGATTTTAACCTATGTGGATTAAGCAGTCAAGTCCCTTACTATGATTATGCCCTTGATTTAATTTTGGACGTTGAATCCTCCCATGGCGACATGTTTACGGAGGAACAAAACGAGTTAATTGAATTTGCAGCCGAGATGCTGTATGGTCTCATTCATGCCCGGTTCATATTGACAAGCAAAGGAATGGCTGCAATGCTGGACAAGTACGAGAACTATGATTTTGGTAGATGCCCAAGAGTTTACTGCTCTGGGCAAACCTGCCTTCCAGTGGGTCAGTCAGATATTGCTCGGTCAAGTACTGTGAAAATATATTGCCCGAGGTGTGAAGACATTTACTATCCTCGCTCCAAGTATCAAGGCAACATCGATGGTGCTTACTTCGGATCAACGTTTCCTCACCTCTTCCTGATGACTTACGGACAACTTAGGCCACAGAAACCATCGCAGAACTATGTCCCGAGAGTTTTTGGCTTCAAACTTCACAAACCACGAAGCTGA 855 0.455 MYSHRERERQRGTVPSKSELDRKRISDVLDRSSPSTSKVINGGKDRSSAKSSSYTNTDSRSASNPISKNSNASDEESETDSEGSDISGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIEFAAEMLYGLIHARFILTSKGMAAMLDKYENYDFGRCPRVYCSGQTCLPVGQSDIARSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGSTFPHLFLMTYGQLRPQKPSQNYVPRVFGFKLHKPRS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1253 284 MobiDBLite consensus disorder prediction 30 72 - -
Lal23g1253 284 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 88 192 IPR016149 GO:0005956|GO:0019887
Lal23g1253 284 Gene3D - 193 267 - -
Lal23g1253 284 PANTHER CASEIN KINASE II SUBUNIT BETA 9 281 IPR000704 GO:0005956|GO:0019887
Lal23g1253 284 SMART CK_II_beta_2 95 278 IPR000704 GO:0005956|GO:0019887
Lal23g1253 284 PRINTS Casein kinase II regulatory subunit family signature 95 111 IPR000704 GO:0005956|GO:0019887
Lal23g1253 284 PRINTS Casein kinase II regulatory subunit family signature 112 126 IPR000704 GO:0005956|GO:0019887
Lal23g1253 284 PRINTS Casein kinase II regulatory subunit family signature 167 188 IPR000704 GO:0005956|GO:0019887
Lal23g1253 284 PRINTS Casein kinase II regulatory subunit family signature 192 213 IPR000704 GO:0005956|GO:0019887
Lal23g1253 284 PRINTS Casein kinase II regulatory subunit family signature 214 235 IPR000704 GO:0005956|GO:0019887
Lal23g1253 284 PRINTS Casein kinase II regulatory subunit family signature 242 259 IPR000704 GO:0005956|GO:0019887
Lal23g1253 284 MobiDBLite consensus disorder prediction 1 91 - -
Lal23g1253 284 Pfam Casein kinase II regulatory subunit 95 278 IPR000704 GO:0005956|GO:0019887
Lal23g1253 284 ProSitePatterns Casein kinase II regulatory subunit signature. 196 227 IPR000704 GO:0005956|GO:0019887
Lal23g1253 284 PANTHER CASEIN KINASE II SUBUNIT BETA-2 9 281 - -
Lal23g1253 284 SUPERFAMILY Casein kinase II beta subunit 93 282 IPR035991 GO:0005956|GO:0019887
Lal23g1253 284 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1253 Lal-Chr23 13652016 13655072 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1253 K03115 - gmx:100780095 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0870 16 5707649 5712126 Lal23g1253 23 13652016 13655072 LSH
Lal15g0855 15 6414400 6418499 Lal23g1253 23 13652016 13655072 LSH
Lal23g1253 23 13652016 13655072 Lal23g0755 23 10143447 10147655 PCT
Lal15g0855 15 6414400 6418499 Lal23g1253 23 13652016 13655072 PCT