Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0870 ATGGCAGGCATGTACAGAGACCGTGTTGTTGGTTCCATTTCCAAATCGGAGGATCGGAAACGAATCAATGAGGTCCTTGATAAGCAGCTTGAGCGTTCATCACCTTCTACTTCAAGACCCATTAACCCTAAAGATAGAGATATTAGGTCCTCCCTTCATTCTTCTAATATCTCCAAAAATTCCAACGTTTCAGCTGCAGAGGAATCTGAAACAGGCAGTGAAGAGTCAGATGTTAGTGGTTCTGATGGAGATGACACATCTTGGATCTCATGGTTCTGCAATCTGAGAGGAAATGAGTTCTTTTGCGAGGTTGATGATGATTACATCCAAGATGACTTTAACCTCTGTGGATTAAGCAGTCAAGTGCCTTACTATGATTATGCTCTTGATTTAATTTTGGATGTTGAGTCTTCCCATGGTGACATGTTCACAGAGGAGCAAAATGAGTTAATTGAATCGGCAGCGGAGATGCTTTACGGTCTGATTCATGCCCGATATGTATTGACAAGCAAAGGAATGGCTGCCATGCTCGACAAGTACAAGAACTATGATTTTGGTAGATGCCCAAGAGTTTATTGCTCTGGACAACCCTGCCTTCCAGTTGGTCAGTCAGACATTCCTAGGTCAAGTACCGTGAAAATATATTGTCCTAGGTGTGAAGACCTTTACTATCCTCGGTCCAAGTATCAAGGCAACATCGATGGAGCTTATTTTGGAACAACATTTCCACATCTCTTCTTGATGACATATGGACAACTAAAGCCACAAAAGCCATCACAGAGCTATGTTCCTAGAGTTTTTGGTTTCAAAATTCACAAGCCATGA 825 0.4206 MAGMYRDRVVGSISKSEDRKRINEVLDKQLERSSPSTSRPINPKDRDIRSSLHSSNISKNSNVSAAEESETGSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKIHKP 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0870 274 Pfam Casein kinase II regulatory subunit 87 270 IPR000704 GO:0005956|GO:0019887
Lal16g0870 274 MobiDBLite consensus disorder prediction 1 83 - -
Lal16g0870 274 ProSitePatterns Casein kinase II regulatory subunit signature. 188 219 IPR000704 GO:0005956|GO:0019887
Lal16g0870 274 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 80 184 IPR016149 GO:0005956|GO:0019887
Lal16g0870 274 PANTHER CASEIN KINASE II SUBUNIT BETA 4 273 IPR000704 GO:0005956|GO:0019887
Lal16g0870 274 SUPERFAMILY Casein kinase II beta subunit 85 273 IPR035991 GO:0005956|GO:0019887
Lal16g0870 274 Gene3D - 185 259 - -
Lal16g0870 274 PANTHER CASEIN KINASE II SUBUNIT BETA-2 4 273 - -
Lal16g0870 274 MobiDBLite consensus disorder prediction 53 69 - -
Lal16g0870 274 PRINTS Casein kinase II regulatory subunit family signature 87 103 IPR000704 GO:0005956|GO:0019887
Lal16g0870 274 PRINTS Casein kinase II regulatory subunit family signature 104 118 IPR000704 GO:0005956|GO:0019887
Lal16g0870 274 PRINTS Casein kinase II regulatory subunit family signature 159 180 IPR000704 GO:0005956|GO:0019887
Lal16g0870 274 PRINTS Casein kinase II regulatory subunit family signature 184 205 IPR000704 GO:0005956|GO:0019887
Lal16g0870 274 PRINTS Casein kinase II regulatory subunit family signature 206 227 IPR000704 GO:0005956|GO:0019887
Lal16g0870 274 PRINTS Casein kinase II regulatory subunit family signature 234 251 IPR000704 GO:0005956|GO:0019887
Lal16g0870 274 SMART CK_II_beta_2 87 270 IPR000704 GO:0005956|GO:0019887
Lal16g0870 274 MobiDBLite consensus disorder prediction 11 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0870 Lal-Chr16 5707649 5712126 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0870 K03115 - gmx:100799304 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0870 16 5707649 5712126 Lal15g0855 15 6414400 6418499 LSH
Lal16g0870 16 5707649 5712126 Lal23g1253 23 13652016 13655072 LSH
Lal16g0870 16 5707649 5712126 Lal23g0755 23 10143447 10147655 PCT
Lal15g0855 15 6414400 6418499 Lal16g0870 16 5707649 5712126 PCT