Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0755 ATGTCAGGCATGTATAGAGAACGTGTCGGTGGTTCCATTTCCAAATCTGAGGATCGGAAACGAATCAATGAGGTTCTCGATAAGCAGCTCGAGCGATCTTCACCCTCAACTTCAAGACCCATTAAGGATAATAAGTCTTCTGTTAATTCTGCTAACATCTCCAAAAATTCTAATGTTTCAGCTGCAGAGGAATCGGAAACAGACAGTGAAGAGTCAGATGTTAGTGGTTCTGATGGAGATGACACATCTTGGATCTCTTGGTTTTGCAATCTTAGAGGAAATGAGTTCTTTTGCGAAGTTGATGACGATTACATCCAAGACGACTTCAACCTCTGTGGATTAAGCAGTCAAGTGCCTTATTATGATTATGCTCTTGATTTAATTTTGGATGTTGAGTCTTCCCATGGTGACATGTTCACAGAGGAGCAAAATGAGTTAATTGAATCGGCAGCAGAGATGCTTTATGGTCTGATTCATGCTCGATATGTATTGACAAGCAAAGGAATGGCTGCCATGCTCGACAAGTACAAGAACTATGATTTTGGCAGATGCCCAAGAGTTTATTGCTCTGGACAACCTTGTCTTCCGGTGGGTCAGTCAGACATTCCTAGGTCAAGTACCGTGAAAATATACTGCCCTAGGTGTGAAGACCTTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGCGCTTACTTCGGAACAACATTTCCACACCTATTCTTGATGACATATGGACAACTGAAGCCACAGAAGCCATCACAGAGCTATGTTCCAAGAGTTTTTGGATTCAAACTTCACAAGCCATGA 813 0.4219 MSGMYRERVGGSISKSEDRKRINEVLDKQLERSSPSTSRPIKDNKSSVNSANISKNSNVSAAEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0755 270 MobiDBLite consensus disorder prediction 29 63 - -
Lal23g0755 270 PANTHER CASEIN KINASE II SUBUNIT BETA-2 4 269 - -
Lal23g0755 270 SMART CK_II_beta_2 83 266 IPR000704 GO:0005956|GO:0019887
Lal23g0755 270 ProSitePatterns Casein kinase II regulatory subunit signature. 184 215 IPR000704 GO:0005956|GO:0019887
Lal23g0755 270 MobiDBLite consensus disorder prediction 1 79 - -
Lal23g0755 270 SUPERFAMILY Casein kinase II beta subunit 81 269 IPR035991 GO:0005956|GO:0019887
Lal23g0755 270 PANTHER CASEIN KINASE II SUBUNIT BETA 4 269 IPR000704 GO:0005956|GO:0019887
Lal23g0755 270 PRINTS Casein kinase II regulatory subunit family signature 83 99 IPR000704 GO:0005956|GO:0019887
Lal23g0755 270 PRINTS Casein kinase II regulatory subunit family signature 100 114 IPR000704 GO:0005956|GO:0019887
Lal23g0755 270 PRINTS Casein kinase II regulatory subunit family signature 155 176 IPR000704 GO:0005956|GO:0019887
Lal23g0755 270 PRINTS Casein kinase II regulatory subunit family signature 180 201 IPR000704 GO:0005956|GO:0019887
Lal23g0755 270 PRINTS Casein kinase II regulatory subunit family signature 202 223 IPR000704 GO:0005956|GO:0019887
Lal23g0755 270 PRINTS Casein kinase II regulatory subunit family signature 230 247 IPR000704 GO:0005956|GO:0019887
Lal23g0755 270 Gene3D - 181 255 - -
Lal23g0755 270 MobiDBLite consensus disorder prediction 11 28 - -
Lal23g0755 270 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 76 180 IPR016149 GO:0005956|GO:0019887
Lal23g0755 270 Pfam Casein kinase II regulatory subunit 83 266 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0755 Lal-Chr23 10143447 10147655 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0755 K03115 - gmx:100799304 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0755 23 10143447 10147655 Lal23g0755 23 10143447 10147655 ECH
Lal16g0870 16 5707649 5712126 Lal23g0755 23 10143447 10147655 PCT
Lal15g0855 15 6414400 6418499 Lal23g0755 23 10143447 10147655 PCT
Lal23g1253 23 13652016 13655072 Lal23g0755 23 10143447 10147655 PCT