Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1250 ATGGGTTGTTTTCACTCTAAAGTAGCAGGACAATACTTTCCTGGGCAGGAAGATCCAGCAACCCTTGCATCACAAACTGTTTTCACCTTCAGTGAGGTGGAAGCGCTGTTTGAACTTTTTAAGAGCATCAGCGGCTCTGTCATTGATGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCAATTTTCAAGAGTAGGAAAGAAGAGAATCTTTTTGCAAATCGGATCTTTGATCTATTTGACGTTAAGAGGAAGGGAGTCATTGATTTTGGTGACTTTGTTAGAGCACTCAGTGTTTTCCACCCAAATGCACAACAACAAGTCAAGATAGATTTTTCTTTTAGGCTCTACGATTTGGATGGTACAGGCTTTATAGAGCGCCATGAGGTCAAGCAAATGATAATTGCACTTCTTTGTGAGTCTGAAATAAAGTTGACAGATGAGATGATAGAAACGATTATTAATAAGACTTTCTTGGCTGCTGACCCAAACCAAGATGGGAAAATAGACAAGTCTGAATGGCAAAATTTCGTTTCTGAAAATCCATCACTTCTAAAAATCATGACACTACCCTACCTAAGGGACATAACAACTTCTTTCCCAAGTTTTGTATTTAACTCCAAGGTGGATGATGGTGTTGATGCTTGA 648 0.3889 MGCFHSKVAGQYFPGQEDPATLASQTVFTFSEVEALFELFKSISGSVIDDGLISKEEFQLAIFKSRKEENLFANRIFDLFDVKRKGVIDFGDFVRALSVFHPNAQQQVKIDFSFRLYDLDGTGFIERHEVKQMIIALLCESEIKLTDEMIETIINKTFLAADPNQDGKIDKSEWQNFVSENPSLLKIMTLPYLRDITTSFPSFVFNSKVDDGVDA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1250 215 CDD EFh 109 179 IPR002048 GO:0005509
Lal23g1250 215 SUPERFAMILY EF-hand 20 203 IPR011992 -
Lal23g1250 215 Pfam EF-hand domain pair 109 178 IPR002048 GO:0005509
Lal23g1250 215 PANTHER CALCINEURIN B 1 211 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lal23g1250 215 PRINTS Recoverin family signature 76 97 - -
Lal23g1250 215 PRINTS Recoverin family signature 123 141 - -
Lal23g1250 215 PRINTS Recoverin family signature 169 189 - -
Lal23g1250 215 PANTHER CALCINEURIN B-LIKE MOLECULE 1 211 - -
Lal23g1250 215 SMART efh_1 72 100 IPR002048 GO:0005509
Lal23g1250 215 SMART efh_1 153 181 IPR002048 GO:0005509
Lal23g1250 215 SMART efh_1 109 137 IPR002048 GO:0005509
Lal23g1250 215 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Lal23g1250 215 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Lal23g1250 215 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Lal23g1250 215 Gene3D - 18 212 - -
Lal23g1250 215 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
Lal23g1250 215 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1250 Lal-Chr23 13637713 13641016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1250 1 211 EF-hand Containing Proteins AT4G17615 76.777 3.85e-119 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1250 K06268 - cit:102622664 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1250 23 13637713 13641016 Lal23g1250 23 13637713 13641016 ECH
Lal16g0872 16 5725684 5730146 Lal23g1250 23 13637713 13641016 LSH
Lal23g1250 23 13637713 13641016 Lal23g0754 23 10137236 10141984 PCT
Lal23g0754 23 10137236 10141984 Lal23g1250 23 13637713 13641016 PCT