Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0872 ATGGGCTGTTTCGCCTCTAAGGTTAAGAAACAGTTTCCTGGCCAGGAAGATCCAGTAGTTCTTGCTTCACAGACAGCATTCACTGTCAGCGAGGTTGAAGCACTGTTTGAGCTTTTTAAGAGCATCAGTAGCTCTGTCATAGATGATGGGCTAATAAGCAAGGAAGAATTTCAATTGGCCATTTTCAAAAATAGGAAAAAGGAGAATATCTTCGCAAACAGGATATTTGATCTATTTGATGTTAAGAAGAAGGGAGTCATTGATTTTGATGACTTTGTTAGATCTCTCAATGTCTTCCACCCAAATGCACCACTTGAAGACAAGATAGATTTTTCATTTAAGCTCTATGATTTGGACAATACAGGATTTATAGAGCGCCAAGAGGTCAAGCAAATGTTAATTGCGCTTCTATTTGAATCTGAAATGAAGTTGGCAGATGAGGTGATAGAAACAATTATTGACAAGACTTTCATGGATGCTGACCTGAACCAAGATGGGAAAATAGACATTATGGAGTGGCAAAACTTTGTTTCCAAAAACCCATCACTGCTTAAAATCATGACCCTACCCTACCTGAGGGATATAACAACCTCTTTCCCAAGTTTTGTATTTAACTCTAATGTGGATGAAGTTGCTACATAA 642 0.3816 MGCFASKVKKQFPGQEDPVVLASQTAFTVSEVEALFELFKSISSSVIDDGLISKEEFQLAIFKNRKKENIFANRIFDLFDVKKKGVIDFDDFVRSLNVFHPNAPLEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLFESEMKLADEVIETIIDKTFMDADLNQDGKIDIMEWQNFVSKNPSLLKIMTLPYLRDITTSFPSFVFNSNVDEVAT 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0872 213 SMART efh_1 71 99 IPR002048 GO:0005509
Lal16g0872 213 SMART efh_1 108 136 IPR002048 GO:0005509
Lal16g0872 213 SMART efh_1 152 180 IPR002048 GO:0005509
Lal16g0872 213 PRINTS Recoverin family signature 75 96 - -
Lal16g0872 213 PRINTS Recoverin family signature 122 140 - -
Lal16g0872 213 PRINTS Recoverin family signature 168 188 - -
Lal16g0872 213 CDD EFh 108 178 IPR002048 GO:0005509
Lal16g0872 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Lal16g0872 213 PANTHER CALCINEURIN B 1 213 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lal16g0872 213 Gene3D - 17 211 - -
Lal16g0872 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Lal16g0872 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Lal16g0872 213 SUPERFAMILY EF-hand 21 202 IPR011992 -
Lal16g0872 213 Pfam EF-hand domain pair 107 176 IPR002048 GO:0005509
Lal16g0872 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Lal16g0872 213 PANTHER CALCINEURIN B-LIKE MOLECULE 1 213 - -
Lal16g0872 213 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0872 Lal-Chr16 5725684 5730146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0872 1 213 EF-hand Containing Proteins AT4G17615 82.160 5.30e-130 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0872 K06268 - cit:102622664 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0872 16 5725684 5730146 Lal16g0872 16 5725684 5730146 ECH
Lal16g0872 16 5725684 5730146 Lal23g1250 23 13637713 13641016 LSH
Lal16g0872 16 5725684 5730146 Lal23g0754 23 10137236 10141984 PCT
Lal23g0754 23 10137236 10141984 Lal16g0872 16 5725684 5730146 PCT