Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0754 ATGGGTTGTTTCAACTCTAAGGCTAACAGACAGTATCCTGGACACGGAGATCCGGTAGTTCTTGCATCGCAGACAGCTTTCACTGTCAGCGAGATTGAAGCACTATTTGAGCTTTTTAAGAGCATCAGCAGTTCTGTCATAGACGATGGGCTAATAAGCAAGGAAGAATTCCAATTGGCAATTTTCCAAAATAGACAAAAGGAGAACATCTTCGCAAACCGGATCTTTGATCTATTTGATGTTAAGAAGAAGGGTGTCATTGATTTTGACGACTTTGTTAGATCTATCAATGTCTTCCACCCAAATGCACGACTTGAAGACAAGGTAGATTTTTCATTTAAGCTCTACGATTTATACAATACAGGATTTATAGAGCGCGAAGAGGTCAAGCGAATGTTAATTGCGCTTCTATGTGAAACTGAAATGAAGTTGGCAGACGAGATGATAGAAACAATTCTTGACAAGACTTTTGTGGAAGCTGACCTGAACCAAGATGGGAAAATAGACATTGTGGAGTGGCAAAATTTTGTTTCTAAAAACCCTTCAATACTTAAAATCATGACCCTACCCTACCTCAGGGACTTAACAACTTGTTTCCCAAGTTTTGTATTTAACTCTAATGTGGATGAAGCTAATGCTTGA 642 0.3894 MGCFNSKANRQYPGHGDPVVLASQTAFTVSEIEALFELFKSISSSVIDDGLISKEEFQLAIFQNRQKENIFANRIFDLFDVKKKGVIDFDDFVRSINVFHPNARLEDKVDFSFKLYDLYNTGFIEREEVKRMLIALLCETEMKLADEMIETILDKTFVEADLNQDGKIDIVEWQNFVSKNPSILKIMTLPYLRDLTTCFPSFVFNSNVDEANA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0754 213 PANTHER CALCINEURIN B 1 211 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lal23g0754 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Lal23g0754 213 PRINTS Recoverin family signature 75 96 - -
Lal23g0754 213 PRINTS Recoverin family signature 122 140 - -
Lal23g0754 213 PRINTS Recoverin family signature 168 188 - -
Lal23g0754 213 SMART efh_1 152 180 IPR002048 GO:0005509
Lal23g0754 213 SMART efh_1 71 99 IPR002048 GO:0005509
Lal23g0754 213 SMART efh_1 108 136 IPR002048 GO:0005509
Lal23g0754 213 Pfam EF-hand domain pair 109 176 IPR002048 GO:0005509
Lal23g0754 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Lal23g0754 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Lal23g0754 213 CDD EFh 108 178 IPR002048 GO:0005509
Lal23g0754 213 PANTHER CALCINEURIN B-LIKE MOLECULE 1 211 - -
Lal23g0754 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Lal23g0754 213 Gene3D - 17 211 - -
Lal23g0754 213 SUPERFAMILY EF-hand 21 201 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0754 Lal-Chr23 10137236 10141984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0754 1 210 EF-hand Containing Proteins AT4G17615 77.143 6.23e-123 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0754 K06268 - vvi:100243294 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0754 23 10137236 10141984 Lal23g0754 23 10137236 10141984 ECH
Lal16g0872 16 5725684 5730146 Lal23g0754 23 10137236 10141984 PCT
Lal23g1250 23 13637713 13641016 Lal23g0754 23 10137236 10141984 PCT
Lal23g0754 23 10137236 10141984 Lal16g0872 16 5725684 5730146 PCT
Lal23g0754 23 10137236 10141984 Lal23g1250 23 13637713 13641016 PCT