Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1186 ATGGAGACTTGGTCATCGGTGGATGTAGTGGTAGAAGAGATAATGAGGATTCATAAATCTTTACCTGCTAGACCAGGGATTGATGAAGTTGAAGCTGCAAAAGCTTTGATAATCAATGTTGAGAGAGAAGACCAAGTGAGATTTGAATGCATAGCCAAACAAAATAAGGGTGCTGAAGTGCCAGAAGAGTTGTTTATGCTCCTGCAAGAGATGCAGAAGAATTTGGTTTATTTTCAGAGCAATGAGCAAAAGAGGGAGGCTATGAAACTTCTTGATCTTGAAAATGTTCACTCTCTATTTGATGAATTGATTCAGAGAGCTTCCAACTGTGTTTCTTCATCTCCCTCCAGTTCCAATTTGAATTCTAGAAAAACCAGTTACTCCGATGGTTCCACTTCAACGGTTTCTACTAGTTTGTCGAAGAATTCTGTTTCTGCTTCAGCTTCTCGAGGTGGTTTTGATAAGCTGCCACTTCCTGCTGCTGCTGCTGCTTCTTCCACTTTGTTCGATGCAGAGAAAGAACCTGTGAAAAGTTCAGATTTGTTCACAAGAGATGACAGTTATGTTAAGAGCAAGTCCACATTCTACTCCAACAGTTATGGAATTCAACCCAATATCCCATCAAAACCACAGATATTGGATTCATCACTAAAATCCATAAATACTGCAGGTCAAGTTGGTGATAAGCTGAGTTTGATAAAACTTGCTAGCTTAATTGAAGTTTCTGCAAAGAAAGGGACTCGTGATCTCAAACTCCAGAATAAGTTGATGGACCAAGTTGATTGGTTGCCTGATTCAATAGGGAAGTTATCAAGTTTGGTTACCCTTGATTTATCCGAGAATCGGATTATGGCCCTACCTACCACAATTGGAAGCCTTTCATCCTTGACCAGATTGGATTTGCATTCCAATAGGATCACAGAGCTCCCTGATTCTATTGGAAATCTGCTATGTGTAGTCTATCTAGATCTGCGGGGAAACCAGTTATCGTCTCTGCCTGCCTCTTTTGGCAAATTAGTATGTCTTGAGGAGCTTGATTTGAGTTCAAATCAGCTTTCAGTACTTCCTGACAATATAGGGTCACTCGTTAGCCTAAAAATATTGAATGTGGAGACAAATGATATTGAAGAAATTCCACATTCTATTGGTAATTGTTCTTCCCTTAGAGAGCTTCGTGCTGACTATAATCGGCTTAAAGCCCTACCAGAAGCTGTAGGGAAGATTCACAGCCTAGAGATTTTGTCCACGCGGTACAATAACATTAAACAACTGCCGACGACAATGTCATCTCTAATAAACCTGAAGGAACTTGATGTGAGTTTCAATGAGCTTGAGTCAGTGCCTGAGAGCTTATGTTTTGCTACCTCTCTTGTCAAGTTGGTCATAGGAAACAATTTTGCTGACATGAGATCGTTACCAAAATCCATTGGGAACCTTGAAATGCTTGAGGTATTAGATATCAGCAATAATCAGATACATGTTCTTCCTGACTCATTTAGGATGCTCACACGATTACGTGTCCTGCGAGTGGAAGAGAATCCTCTTGAAGTTCCACCAAGACATATAGCTGAAAAGGGAGCACAGGCTGTTGTCCAATACATGGCTGAGCTTGTGGAGAAGAGGGAAAAGAAGGATATTAAACCTCAGCAAGTTAAGCAGAAAAAAAGTTGGGCTCAGATCTGCTTCTTTTCAAACTCTAACAAAAGAAAGCGTGATGGAGTTGAACCTGATTTCATTTAG 1740 0.404 METWSSVDVVVEEIMRIHKSLPARPGIDEVEAAKALIINVEREDQVRFECIAKQNKGAEVPEELFMLLQEMQKNLVYFQSNEQKREAMKLLDLENVHSLFDELIQRASNCVSSSPSSSNLNSRKTSYSDGSTSTVSTSLSKNSVSASASRGGFDKLPLPAAAAASSTLFDAEKEPVKSSDLFTRDDSYVKSKSTFYSNSYGIQPNIPSKPQILDSSLKSINTAGQVGDKLSLIKLASLIEVSAKKGTRDLKLQNKLMDQVDWLPDSIGKLSSLVTLDLSENRIMALPTTIGSLSSLTRLDLHSNRITELPDSIGNLLCVVYLDLRGNQLSSLPASFGKLVCLEELDLSSNQLSVLPDNIGSLVSLKILNVETNDIEEIPHSIGNCSSLRELRADYNRLKALPEAVGKIHSLEILSTRYNNIKQLPTTMSSLINLKELDVSFNELESVPESLCFATSLVKLVIGNNFADMRSLPKSIGNLEMLEVLDISNNQIHVLPDSFRMLTRLRVLRVEENPLEVPPRHIAEKGAQAVVQYMAELVEKREKKDIKPQQVKQKKSWAQICFFSNSNKRKRDGVEPDFI 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1186 579 Pfam Leucine rich repeat 295 352 IPR001611 GO:0005515
Lal23g1186 579 Pfam Leucine rich repeat 456 515 IPR001611 GO:0005515
Lal23g1186 579 Gene3D Ribonuclease Inhibitor 421 537 IPR032675 -
Lal23g1186 579 Gene3D Ribonuclease Inhibitor 323 420 IPR032675 -
Lal23g1186 579 Gene3D Ribonuclease Inhibitor 205 322 IPR032675 -
Lal23g1186 579 ProSiteProfiles Leucine-rich repeat profile. 341 362 IPR001611 GO:0005515
Lal23g1186 579 ProSiteProfiles Leucine-rich repeat profile. 481 502 IPR001611 GO:0005515
Lal23g1186 579 ProSiteProfiles Leucine-rich repeat profile. 295 316 IPR001611 GO:0005515
Lal23g1186 579 SUPERFAMILY L domain-like 254 518 - -
Lal23g1186 579 MobiDBLite consensus disorder prediction 110 141 - -
Lal23g1186 579 ProSiteProfiles Leucine-rich repeat profile. 433 454 IPR001611 GO:0005515
Lal23g1186 579 PRINTS Leucine-rich repeat signature 342 355 - -
Lal23g1186 579 PRINTS Leucine-rich repeat signature 479 492 - -
Lal23g1186 579 SMART LRR_sd22_2 316 334 - -
Lal23g1186 579 SMART LRR_sd22_2 479 499 - -
Lal23g1186 579 SMART LRR_sd22_2 270 295 - -
Lal23g1186 579 SMART LRR_sd22_2 431 449 - -
Lal23g1186 579 SMART LRR_sd22_2 339 372 - -
Lal23g1186 579 SMART LRR_typ_2 431 454 IPR003591 -
Lal23g1186 579 SMART LRR_typ_2 362 385 IPR003591 -
Lal23g1186 579 SMART LRR_typ_2 293 315 IPR003591 -
Lal23g1186 579 SMART LRR_typ_2 316 338 IPR003591 -
Lal23g1186 579 SMART LRR_typ_2 386 407 IPR003591 -
Lal23g1186 579 SMART LRR_typ_2 408 430 IPR003591 -
Lal23g1186 579 SMART LRR_typ_2 479 501 IPR003591 -
Lal23g1186 579 SMART LRR_typ_2 502 525 IPR003591 -
Lal23g1186 579 SMART LRR_typ_2 270 292 IPR003591 -
Lal23g1186 579 SMART LRR_typ_2 339 361 IPR003591 -
Lal23g1186 579 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 4 3 575 - -
Lal23g1186 579 SMART LRR_bac_2 321 335 - -
Lal23g1186 579 SMART LRR_bac_2 479 498 - -
Lal23g1186 579 SMART LRR_bac_2 339 358 - -
Lal23g1186 579 SMART LRR_bac_2 408 427 - -
Lal23g1186 579 SMART LRR_bac_2 385 404 - -
Lal23g1186 579 SMART LRR_bac_2 431 450 - -
Lal23g1186 579 SMART LRR_bac_2 293 312 - -
Lal23g1186 579 SMART LRR_bac_2 270 289 - -
Lal23g1186 579 SMART LRR_bac_2 362 381 - -
Lal23g1186 579 PANTHER LEUCINE-RICH REPEAT-CONTAINING 3 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1186 Lal-Chr23 13217663 13220954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1186 263 532 Receptor kinase-like Gene Family AT3G28890 27.946 1.42e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1186 - - gmx:100787496 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0370 16 2226917 2230317 Lal23g1186 23 13217663 13220954 LSH
Lal15g0307 15 2052334 2055402 Lal23g1186 23 13217663 13220954 LSH